Psmy013352.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- E2F5
- Assembly
- GCA_030142225.1
- Location
- JARQST010000727.1:346523-348459[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-30 3.1e-26 91.0 0.2 2 65 10 74 9 74 0.98
Sequence Information
- Coding Sequence
- ATGGCAGACAATCAGCAAAGCAGATTCGAAAAGTCCCTTGGATTATTAACAACTCGCTTCGTCACGTTATTACAGAAAGCTAAGGATGGTGTGCTCGATTTAAAAGTGgCTGCAGACATCTTGGAAGTTCGTCAAAAAAGACGTATATATGACATTACAAATGTTCTCGAAGGAATTGGTcttattgaaaagaaaagcaaaaatagCATACAATGGAAGGGTGCAGGTCCTGGATGCAACACACAGGAGGTAGGTGAAAAGCTGACCGATTTAAAAGATGAGATCAAAAAGTTAGAGGATCATGAACAGTTATTGGACATGCATACCCAATGGATTCAGCAGAGTATAAAGAATATCGAAAGCGATTTGGCGAATAGAAAGTATGcttatattacatatgaaGACGTTAAAAACAGATTTGGAGAAGAGCTTGTTCTGGGAATTCAAGCTCCATCCGATACACAATTACATGTGCCAAATATTGCAAAGGCAATGGAAGAGGACGAGCAGAACATAAATTATGAAATCTATATGAAAAGTACATCAGgagatataaaagtatatatgatTCAACCCgaattggctgaaatttatgATAACAAAGTTTTGGAAATAAGACTCCAAGAGGAATCAAAAGGTATTAAGagggaaaaggaggaggatgaaaaaaaagaggagtcTAAGCCAAAGAGAAAAGTTGGAAGGCCACCAAGAGGTGCTGGCAAATTAGATCCTGTATTATCagacgatgaagaagaagaagacccAGAATTAATAGAGGCCAAAATAATACTTAGTGGTGTAGGCACATCAGaaATCGTCAGGACAGACCTAGATTTGCTAGACGAATTTTACACGGACGTTTGTGGACCACTAGTGAGACTAAGTCCGCCGCCTGGAGAGAAGGACTATCAATTTAATCTTAGCGAAAGTGAAGGAATTTGCGATCTCTTTGACATTGTGGCAAAGTGA
- Protein Sequence
- MADNQQSRFEKSLGLLTTRFVTLLQKAKDGVLDLKVAADILEVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGAGPGCNTQEVGEKLTDLKDEIKKLEDHEQLLDMHTQWIQQSIKNIESDLANRKYAYITYEDVKNRFGEELVLGIQAPSDTQLHVPNIAKAMEEDEQNINYEIYMKSTSGDIKVYMIQPELAEIYDNKVLEIRLQEESKGIKREKEEDEKKEESKPKRKVGRPPRGAGKLDPVLSDDEEEEDPELIEAKIILSGVGTSEIVRTDLDLLDEFYTDVCGPLVRLSPPPGEKDYQFNLSESEGICDLFDIVAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394917; iTF_00293505; iTF_01475237; iTF_01472967; iTF_01474473; iTF_00292078; iTF_00298095; iTF_00294256; iTF_00296561; iTF_00295795; iTF_00295030; iTF_00297334; iTF_00292729; iTF_00291323; iTF_01537638; iTF_00253354; iTF_00254871; iTF_00252605; iTF_01473706; iTF_00251856; iTF_00770163; iTF_01198457; iTF_01199195; iTF_00254107; iTF_01412101; iTF_01412897; iTF_00059973; iTF_00719177; iTF_00939314; iTF_00718324; iTF_01413948; iTF_01303101; iTF_01411271; iTF_00158895; iTF_01048692; iTF_01048043; iTF_00938459; iTF_01199933; iTF_00174815; iTF_00175555; iTF_00173957; iTF_01120017;
- 90% Identity
- iTF_01394917; iTF_00293505; iTF_01475237; iTF_01472967; iTF_01474473; iTF_00253354; iTF_01473706; iTF_00292078; iTF_00298095; iTF_00251856; iTF_00294256; iTF_00296561; iTF_00295795; iTF_00295030; iTF_00297334; iTF_00254871; iTF_00292729; iTF_00254107; iTF_00291323; iTF_00252605; iTF_00770163; iTF_01198457; iTF_01199195;
- 80% Identity
- -