Psmy002614.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- e2f7
- Assembly
- GCA_030142225.1
- Location
- JARQST010000208.1:205648-208075[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-24 2.3e-20 72.2 0.0 1 65 82 150 82 150 0.90 2 2 4.3e-20 2.2e-16 59.5 0.1 2 59 213 292 212 303 0.90
Sequence Information
- Coding Sequence
- ATGTCGGATTCAGGACGTACGACGATGCGCAGCTCCCCTGAGCCTGAGCGCAAAGTACTTGGTGAACTTGGGAATGCCAAGGCAGAACCAATCTCTCCAACCGCAAACCTACGATTACTCACAACGTTAGCATCCAACTTGAAAAGTGCTTCTGATTggaataatagtaataaaagtCCACATAGTAATTTGGAGGTATTCCATGAAACATCAGATTCCGATCCCTTCAAATTGTTGCCTAGGAAAGAAAAGTCTCTTGGACTCTTGTGCAATAAATTTTTGAGTCTTTATCCTTTGAACAAGGCCAATGATGTTCCAGAAGAAATTTCTCTGGACTGTACTGCTAAGGCACTTGGTACTGAAAAACGTAGAATATATGATATCATAAACGTACTAGAAAGTCTTGAGATGGCCTCCAAAGCTGGAAAGAATCGATACCTATGGCATGGACAAATTGGATTATCTACTACTCTTGCTAAGTTGAAATCAACAGCTATTAGTTTTGGTCTTAGGGAACAAATacgtgaaatacaaaaaaatcatggAGCATATGATGGACAATTCGATGAAGAttcattctcttctttattAGCAACACCACCATTACAAGGTTCTTCAGCCGATATTATAAAAGAAGATAAGAGCTTGGGAGTGATGTGTCAGAAGTTTGTTATgctttttcttgtatctttaaAAaACGGTGTCATCAACCTCGATATAGCCGCTAAGGTTCTTATATCAGATTCAGATCGTACGCCGGAAACGGGAGACACAAGTCTGAGATCCCGTTTCAAAACAAAAGTTCGTCGACTGTACGATATAGCAAACGTATTGACAGCAATTggactgataaaaaaagtcaGTATGCGCGATAACACAATAAAGAAACCAGTGTTTGTTTATACTGGGCCCAACGTTGACTACGTGGACTTTGATGCAGAAACTCCCGGCAAGGAAGGAAAGCCACAGTCTCTCTTAGGAACCCTGACACCTGTAAGAAGTTTTACCAGGGTGTCACTTCCACATCGACTTTCAGAAGGCAGTAAATTACAGACGCCAGATAGATTTTTCTcaagcagcaacagcagcagctaCAACGGTAGTACACCAGTCAATGATAGAAGAGAGCTCAGAAAGAGAAAGCTATTTGGACCAgATCAATCTTTCACGAGAACTAAAAGTTCTCCATGTTTAGACACCAATGAGCGTCCCTCAGAACGTCTTGATGATTCAATTCTAAGAGTCGCCGAAATGGAACTAAAAAGATTGAGATCATCTGAGAAGATAAAGCCAAAGGTCTGCACAAAACTCTTCCCCAGGCATAATTCGGATTCATGTATATCTGCCACACAAATCATTCCCGATATACGGGACTGTACAAACGGTTCCACATCCAGTTTGAACTCTCTACTGTATGACCCGTCAGGATCAAGGGGTCAGTTCACATCTAATACTACCGCTCTGGTTTTGCTACCCAGCAAAGAGAatttacacgaaaaaaatCAGCACTGTATCGTTACAACGGAAACAGTAAAAAGAGCCGAAAATATTGAGGTGTCACCCAGAATAGATTCTTCTCAAGTGCGTACAATACGTCCGCGGATACGAGCTGATGCATCGAAGACAAAACCTGCAATGCTGAAGATCCTGGACCACAATATTGTTTCAGAAGTAAAAGACGCAAGAAATGTATCCGGCAAGTCTCTAATCAGAGACATTACAACGATGACAACGTCGAATATCAAGAAAACCGTGAAAATAGGATCATACAAGGTACGACCTAATGCGAACTCTCTGAAACTAGTGAATTTGGCAAGTTTTGATGCCAAGAAATTAGTGCCTATTAAACCAAGCGATTTGAGAGTCTCAGTGACAACGGCTTCAACACCGACGTCGACCATGATCACGCCATCGCCATTGCGATCGGTTATTCTTGAGAGTCCTAACATTGGCAATGCTAGTTTTGCCATTCTCACTGAAATTCCTACACAAGTGTTATCTCCAGGTGATACCTTCAAGGCCGTTAAAGTAGGTAACACTGTACAACTAGTCCCGGTATACGATGACTCCGGTAAGGGTACTAATCATGGGAATAATATTACTATGGACTCTAGTTAA
- Protein Sequence
- MSDSGRTTMRSSPEPERKVLGELGNAKAEPISPTANLRLLTTLASNLKSASDWNNSNKSPHSNLEVFHETSDSDPFKLLPRKEKSLGLLCNKFLSLYPLNKANDVPEEISLDCTAKALGTEKRRIYDIINVLESLEMASKAGKNRYLWHGQIGLSTTLAKLKSTAISFGLREQIREIQKNHGAYDGQFDEDSFSSLLATPPLQGSSADIIKEDKSLGVMCQKFVMLFLVSLKNGVINLDIAAKVLISDSDRTPETGDTSLRSRFKTKVRRLYDIANVLTAIGLIKKVSMRDNTIKKPVFVYTGPNVDYVDFDAETPGKEGKPQSLLGTLTPVRSFTRVSLPHRLSEGSKLQTPDRFFSSSNSSSYNGSTPVNDRRELRKRKLFGPDQSFTRTKSSPCLDTNERPSERLDDSILRVAEMELKRLRSSEKIKPKVCTKLFPRHNSDSCISATQIIPDIRDCTNGSTSSLNSLLYDPSGSRGQFTSNTTALVLLPSKENLHEKNQHCIVTTETVKRAENIEVSPRIDSSQVRTIRPRIRADASKTKPAMLKILDHNIVSEVKDARNVSGKSLIRDITTMTTSNIKKTVKIGSYKVRPNANSLKLVNLASFDAKKLVPIKPSDLRVSVTTASTPTSTMITPSPLRSVILESPNIGNASFAILTEIPTQVLSPGDTFKAVKVGNTVQLVPVYDDSGKGTNHGNNITMDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394915; iTF_01475235; iTF_01472965; iTF_01473704; iTF_00292076; iTF_00298093; iTF_00294254; iTF_00296559; iTF_00295793; iTF_00295028; iTF_00297332; iTF_00292727; iTF_00291321; iTF_00293503; iTF_01474471; iTF_00770161; iTF_01198455; iTF_01199193; iTF_00254869; iTF_00253352; iTF_00251854; iTF_00254105; iTF_00252603;
- 90% Identity
- -
- 80% Identity
- -