Opom018756.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- -
- Assembly
- GCA_963921995.1
- Location
- OY998166.1:119328923-119347929[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.001 11 7.4 0.1 13 45 281 314 279 323 0.83 2 7 0.00051 5.7 8.4 0.0 23 48 348 373 338 379 0.84 3 7 0.019 2.1e+02 3.4 0.0 21 48 374 400 370 404 0.87 4 7 0.76 8.4e+03 -1.7 0.0 23 46 432 455 426 461 0.78 5 7 0.062 6.8e+02 1.7 0.1 21 43 458 480 449 485 0.85 6 7 0.00083 9.2 7.7 0.0 21 52 486 517 480 519 0.87 7 7 0.069 7.6e+02 1.6 0.0 21 45 514 538 511 542 0.89
Sequence Information
- Coding Sequence
- ATGACCGAATGGTCTGTCGAAAAAAGTTGTAGAGTATGTTTGGTGGAAAGTGAAGATTTTGAGACGATTTTTACCAGTATTTTTTTGGCTAAAGAGAGTACTTCTATGCACCTATCCGAGATGATCGCTAGTTTTAGTAGGGTGCAGattacACTAGGAGATGGACTTCCTGAACGAATATGCAACACTTGTGCAGAAGACACtgtaaatttttatctttttaagcTAAAATGTGAAGAGACTGATAagtttttaagagaaaaattagtaggaaaaattgttgattgtaaagaagaaaatactgaggaaattaaattaactaaaaCAGATATTGAGgAGCAAAATTTGCCAAATGACACGTTTCTAGACAATTTCACCGACTTTTGTGACCCTCCAGATGACTCCTCAAATGACTCAGTGCCGTCCCCGCAAGAAACAAATGAACTGATTCAAAAAACCCCCGAAAAAACCAAAGAATTCGTATGTAATGTTTGTGAAAAACGGTTTTCCAGAGAAGACCTGCTTATGAGACATAAAATAGCTCATGTCAAAAAATTGGATGCTGGAAAAGTTAGTTTAGAAGACGATTTCGAAAATTGTAGCTCTAATCAAGAAGAAGATTTTAGATTTCAGGAAGACCTTGAAACTGACGAGCAAGAAAGTAGTCAAGTTTTTGTAAAATCGGAGCAAATAGAAGTGACTGAGGAGTATGAAAGGTTGCATCCTTGCGATCACTGTGATTTGATTTATATTCACCATGAAGATTTAGTTGAGCACCAAACCTCTCACCAGATGACAGAATCAGAAATAAACTTGCCAAAAGAAATAGAAATAATTAATGAGAATCCCAAATCAAAGTCGACCAATAACGAAGTAGATATAACCTGTGAAATGTGCCATAAACGATTCAATAAAGAAATACACTTAAAAAGGCACATACGCGCGCACcgagttttgaaaaatttcatctGCGACAAGTGCGGCAAAGGTTTTATGAGGAGGGAATATTTGCAAAGCCATATGAAGAGTCACGAGGGGGTCAAGCCCCACACCTGTCAAATTTGTTTGAAAGgTTTCAACCAAATCTCGAACCTAAAAGACCACATGCGCACCCACAATGGCGAAAAACCTTTCCTCTGTTCCACCTGCGGGAAAGGTTTCAATCAGCTCGGCAACTTGAGACAACACGCCGTCAGGCACAGCGGCGTAAAAGCTCACATTTGCACCACTTGCGGCTACGCGTTCGCCAGTAAGGGAGAGTTGGGAGCACATCTTAGAAAACACACGGgcGTCCGTCCGTTCGTCTGTAACGTTTGCAACAACGGGTTTACCACGTCGAGTTCCCTGGTCAAGCACAAGCGCATCCATTCGGGCGAAAAGCCGTACCCCTGCGACGTTTGCCACATGAAATTTTCGAGATCCGGCATTCTGGCCAGGCACAAAAGGACGCACACGGGCGAGAAGCCGTATATATGCACGTTCTGTCAAAAAGCTTTCACCCAATCAAACGATCTCAATTCCCACCTGAGAATCCACACCGGAGAGAAACCGTTCATCTGTGACGAATGCGGGCAAGCTTTTCGACAAAACTCGGCCCTGAAAACGCACAAAAAGGTCCACAAAAATCGGGAGAAAAAAGCGGCGGTCGCGCGGCCGGCGGAGGTCGAGGAAAAAGTGGTTGTGCGACCGTCGGAGCTCGACGAAAGAGTGGTCAATTCGGACAAAAAATACGAACTCGTCAAGTGTAAAGTGTCAAGGAGGGAGACTTTGACTTGTTGA
- Protein Sequence
- MTEWSVEKSCRVCLVESEDFETIFTSIFLAKESTSMHLSEMIASFSRVQITLGDGLPERICNTCAEDTVNFYLFKLKCEETDKFLREKLVGKIVDCKEENTEEIKLTKTDIEEQNLPNDTFLDNFTDFCDPPDDSSNDSVPSPQETNELIQKTPEKTKEFVCNVCEKRFSREDLLMRHKIAHVKKLDAGKVSLEDDFENCSSNQEEDFRFQEDLETDEQESSQVFVKSEQIEVTEEYERLHPCDHCDLIYIHHEDLVEHQTSHQMTESEINLPKEIEIINENPKSKSTNNEVDITCEMCHKRFNKEIHLKRHIRAHRVLKNFICDKCGKGFMRREYLQSHMKSHEGVKPHTCQICLKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHAVRHSGVKAHICTTCGYAFASKGELGAHLRKHTGVRPFVCNVCNNGFTTSSSLVKHKRIHSGEKPYPCDVCHMKFSRSGILARHKRTHTGEKPYICTFCQKAFTQSNDLNSHLRIHTGEKPFICDECGQAFRQNSALKTHKKVHKNREKKAAVARPAEVEEKVVVRPSELDERVVNSDKKYELVKCKVSRRETLTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01128701;
- 90% Identity
- iTF_01128701;
- 80% Identity
- iTF_01128701;