Basic Information

Gene Symbol
-
Assembly
GCA_963921995.1
Location
OY998166.1:119328923-119347929[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.001 11 7.4 0.1 13 45 281 314 279 323 0.83
2 7 0.00051 5.7 8.4 0.0 23 48 348 373 338 379 0.84
3 7 0.019 2.1e+02 3.4 0.0 21 48 374 400 370 404 0.87
4 7 0.76 8.4e+03 -1.7 0.0 23 46 432 455 426 461 0.78
5 7 0.062 6.8e+02 1.7 0.1 21 43 458 480 449 485 0.85
6 7 0.00083 9.2 7.7 0.0 21 52 486 517 480 519 0.87
7 7 0.069 7.6e+02 1.6 0.0 21 45 514 538 511 542 0.89

Sequence Information

Coding Sequence
ATGACCGAATGGTCTGTCGAAAAAAGTTGTAGAGTATGTTTGGTGGAAAGTGAAGATTTTGAGACGATTTTTACCAGTATTTTTTTGGCTAAAGAGAGTACTTCTATGCACCTATCCGAGATGATCGCTAGTTTTAGTAGGGTGCAGattacACTAGGAGATGGACTTCCTGAACGAATATGCAACACTTGTGCAGAAGACACtgtaaatttttatctttttaagcTAAAATGTGAAGAGACTGATAagtttttaagagaaaaattagtaggaaaaattgttgattgtaaagaagaaaatactgaggaaattaaattaactaaaaCAGATATTGAGgAGCAAAATTTGCCAAATGACACGTTTCTAGACAATTTCACCGACTTTTGTGACCCTCCAGATGACTCCTCAAATGACTCAGTGCCGTCCCCGCAAGAAACAAATGAACTGATTCAAAAAACCCCCGAAAAAACCAAAGAATTCGTATGTAATGTTTGTGAAAAACGGTTTTCCAGAGAAGACCTGCTTATGAGACATAAAATAGCTCATGTCAAAAAATTGGATGCTGGAAAAGTTAGTTTAGAAGACGATTTCGAAAATTGTAGCTCTAATCAAGAAGAAGATTTTAGATTTCAGGAAGACCTTGAAACTGACGAGCAAGAAAGTAGTCAAGTTTTTGTAAAATCGGAGCAAATAGAAGTGACTGAGGAGTATGAAAGGTTGCATCCTTGCGATCACTGTGATTTGATTTATATTCACCATGAAGATTTAGTTGAGCACCAAACCTCTCACCAGATGACAGAATCAGAAATAAACTTGCCAAAAGAAATAGAAATAATTAATGAGAATCCCAAATCAAAGTCGACCAATAACGAAGTAGATATAACCTGTGAAATGTGCCATAAACGATTCAATAAAGAAATACACTTAAAAAGGCACATACGCGCGCACcgagttttgaaaaatttcatctGCGACAAGTGCGGCAAAGGTTTTATGAGGAGGGAATATTTGCAAAGCCATATGAAGAGTCACGAGGGGGTCAAGCCCCACACCTGTCAAATTTGTTTGAAAGgTTTCAACCAAATCTCGAACCTAAAAGACCACATGCGCACCCACAATGGCGAAAAACCTTTCCTCTGTTCCACCTGCGGGAAAGGTTTCAATCAGCTCGGCAACTTGAGACAACACGCCGTCAGGCACAGCGGCGTAAAAGCTCACATTTGCACCACTTGCGGCTACGCGTTCGCCAGTAAGGGAGAGTTGGGAGCACATCTTAGAAAACACACGGgcGTCCGTCCGTTCGTCTGTAACGTTTGCAACAACGGGTTTACCACGTCGAGTTCCCTGGTCAAGCACAAGCGCATCCATTCGGGCGAAAAGCCGTACCCCTGCGACGTTTGCCACATGAAATTTTCGAGATCCGGCATTCTGGCCAGGCACAAAAGGACGCACACGGGCGAGAAGCCGTATATATGCACGTTCTGTCAAAAAGCTTTCACCCAATCAAACGATCTCAATTCCCACCTGAGAATCCACACCGGAGAGAAACCGTTCATCTGTGACGAATGCGGGCAAGCTTTTCGACAAAACTCGGCCCTGAAAACGCACAAAAAGGTCCACAAAAATCGGGAGAAAAAAGCGGCGGTCGCGCGGCCGGCGGAGGTCGAGGAAAAAGTGGTTGTGCGACCGTCGGAGCTCGACGAAAGAGTGGTCAATTCGGACAAAAAATACGAACTCGTCAAGTGTAAAGTGTCAAGGAGGGAGACTTTGACTTGTTGA
Protein Sequence
MTEWSVEKSCRVCLVESEDFETIFTSIFLAKESTSMHLSEMIASFSRVQITLGDGLPERICNTCAEDTVNFYLFKLKCEETDKFLREKLVGKIVDCKEENTEEIKLTKTDIEEQNLPNDTFLDNFTDFCDPPDDSSNDSVPSPQETNELIQKTPEKTKEFVCNVCEKRFSREDLLMRHKIAHVKKLDAGKVSLEDDFENCSSNQEEDFRFQEDLETDEQESSQVFVKSEQIEVTEEYERLHPCDHCDLIYIHHEDLVEHQTSHQMTESEINLPKEIEIINENPKSKSTNNEVDITCEMCHKRFNKEIHLKRHIRAHRVLKNFICDKCGKGFMRREYLQSHMKSHEGVKPHTCQICLKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHAVRHSGVKAHICTTCGYAFASKGELGAHLRKHTGVRPFVCNVCNNGFTTSSSLVKHKRIHSGEKPYPCDVCHMKFSRSGILARHKRTHTGEKPYICTFCQKAFTQSNDLNSHLRIHTGEKPFICDECGQAFRQNSALKTHKKVHKNREKKAAVARPAEVEEKVVVRPSELDERVVNSDKKYELVKCKVSRRETLTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01128701;
90% Identity
iTF_01128701;
80% Identity
iTF_01128701;