Basic Information

Insect: Oxystoma pomonae
Gene Symbol: -
Assembly: GCA_963921995.1
Location: OY998166.1:119328923-119347929[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.3e-06 0.0012 20.5 0.4 1 23 160 182 160 182 0.95

2 11 0.015 2.1 10.2 3.9 1 23 241 263 241 263 0.97

3 11 4.7e-05 0.0066 18.1 4.3 2 23 295 316 294 316 0.97

4 11 1.1e-06 0.00015 23.3 1.2 1 23 322 344 322 344 0.98

5 11 3.1e-06 0.00044 21.8 2.3 1 23 350 372 350 372 0.98

6 11 5.4e-05 0.0076 17.9 0.4 1 23 378 400 378 400 0.93

7 11 1.5e-05 0.0022 19.6 0.3 1 23 406 428 406 428 0.97

8 11 6.4e-06 0.0009 20.8 0.7 1 23 434 456 434 456 0.98

9 11 0.00014 0.02 16.6 1.5 1 23 462 484 462 484 0.98

10 11 1.5e-06 0.0002 22.8 1.0 1 23 490 512 490 512 0.98

11 11 8.4e-07 0.00012 23.6 0.4 1 23 518 540 518 540 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.3e-06	0.0012	20.5	0.4	1	23	160	182	160	182	0.95
2	11	0.015	2.1	10.2	3.9	1	23	241	263	241	263	0.97
3	11	4.7e-05	0.0066	18.1	4.3	2	23	295	316	294	316	0.97
4	11	1.1e-06	0.00015	23.3	1.2	1	23	322	344	322	344	0.98
5	11	3.1e-06	0.00044	21.8	2.3	1	23	350	372	350	372	0.98
6	11	5.4e-05	0.0076	17.9	0.4	1	23	378	400	378	400	0.93
7	11	1.5e-05	0.0022	19.6	0.3	1	23	406	428	406	428	0.97
8	11	6.4e-06	0.0009	20.8	0.7	1	23	434	456	434	456	0.98
9	11	0.00014	0.02	16.6	1.5	1	23	462	484	462	484	0.98
10	11	1.5e-06	0.0002	22.8	1.0	1	23	490	512	490	512	0.98
11	11	8.4e-07	0.00012	23.6	0.4	1	23	518	540	518	540	0.97

Sequence Information

Coding Sequence: ATGACCGAATGGTCTGTCGAAAAAAGTTGTAGAGTATGTTTGGTGGAAAGTGAAGATTTTGAGACGATTTTTACCAGTATTTTTTTGGCTAAAGAGAGTACTTCTATGCACCTATCCGAGATGATCGCTAGTTTTAGTAGGGTGCAGattacACTAGGAGATGGACTTCCTGAACGAATATGCAACACTTGTGCAGAAGACACtgtaaatttttatctttttaagcTAAAATGTGAAGAGACTGATAagtttttaagagaaaaattagtaggaaaaattgttgattgtaaagaagaaaatactgaggaaattaaattaactaaaaCAGATATTGAGgAGCAAAATTTGCCAAATGACACGTTTCTAGACAATTTCACCGACTTTTGTGACCCTCCAGATGACTCCTCAAATGACTCAGTGCCGTCCCCGCAAGAAACAAATGAACTGATTCAAAAAACCCCCGAAAAAACCAAAGAATTCGTATGTAATGTTTGTGAAAAACGGTTTTCCAGAGAAGACCTGCTTATGAGACATAAAATAGCTCATGTCAAAAAATTGGATGCTGGAAAAGTTAGTTTAGAAGACGATTTCGAAAATTGTAGCTCTAATCAAGAAGAAGATTTTAGATTTCAGGAAGACCTTGAAACTGACGAGCAAGAAAGTAGTCAAGTTTTTGTAAAATCGGAGCAAATAGAAGTGACTGAGGAGTATGAAAGGTTGCATCCTTGCGATCACTGTGATTTGATTTATATTCACCATGAAGATTTAGTTGAGCACCAAACCTCTCACCAGATGACAGAATCAGAAATAAACTTGCCAAAAGAAATAGAAATAATTAATGAGAATCCCAAATCAAAGTCGACCAATAACGAAGTAGATATAACCTGTGAAATGTGCCATAAACGATTCAATAAAGAAATACACTTAAAAAGGCACATACGCGCGCACcgagttttgaaaaatttcatctGCGACAAGTGCGGCAAAGGTTTTATGAGGAGGGAATATTTGCAAAGCCATATGAAGAGTCACGAGGGGGTCAAGCCCCACACCTGTCAAATTTGTTTGAAAGgTTTCAACCAAATCTCGAACCTAAAAGACCACATGCGCACCCACAATGGCGAAAAACCTTTCCTCTGTTCCACCTGCGGGAAAGGTTTCAATCAGCTCGGCAACTTGAGACAACACGCCGTCAGGCACAGCGGCGTAAAAGCTCACATTTGCACCACTTGCGGCTACGCGTTCGCCAGTAAGGGAGAGTTGGGAGCACATCTTAGAAAACACACGGgcGTCCGTCCGTTCGTCTGTAACGTTTGCAACAACGGGTTTACCACGTCGAGTTCCCTGGTCAAGCACAAGCGCATCCATTCGGGCGAAAAGCCGTACCCCTGCGACGTTTGCCACATGAAATTTTCGAGATCCGGCATTCTGGCCAGGCACAAAAGGACGCACACGGGCGAGAAGCCGTATATATGCACGTTCTGTCAAAAAGCTTTCACCCAATCAAACGATCTCAATTCCCACCTGAGAATCCACACCGGAGAGAAACCGTTCATCTGTGACGAATGCGGGCAAGCTTTTCGACAAAACTCGGCCCTGAAAACGCACAAAAAGGTCCACAAAAATCGGGAGAAAAAAGCGGCGGTCGCGCGGCCGGCGGAGGTCGAGGAAAAAGTGGTTGTGCGACCGTCGGAGCTCGACGAAAGAGTGGTCAATTCGGACAAAAAATACGAACTCGTCAAGTGTAAAGTGTCAAGGAGGGAGACTTTGACTTGTTGA
Protein Sequence: MTEWSVEKSCRVCLVESEDFETIFTSIFLAKESTSMHLSEMIASFSRVQITLGDGLPERICNTCAEDTVNFYLFKLKCEETDKFLREKLVGKIVDCKEENTEEIKLTKTDIEEQNLPNDTFLDNFTDFCDPPDDSSNDSVPSPQETNELIQKTPEKTKEFVCNVCEKRFSREDLLMRHKIAHVKKLDAGKVSLEDDFENCSSNQEEDFRFQEDLETDEQESSQVFVKSEQIEVTEEYERLHPCDHCDLIYIHHEDLVEHQTSHQMTESEINLPKEIEIINENPKSKSTNNEVDITCEMCHKRFNKEIHLKRHIRAHRVLKNFICDKCGKGFMRREYLQSHMKSHEGVKPHTCQICLKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHAVRHSGVKAHICTTCGYAFASKGELGAHLRKHTGVRPFVCNVCNNGFTTSSSLVKHKRIHSGEKPYPCDVCHMKFSRSGILARHKRTHTGEKPYICTFCQKAFTQSNDLNSHLRIHTGEKPFICDECGQAFRQNSALKTHKKVHKNREKKAAVARPAEVEEKVVVRPSELDERVVNSDKKYELVKCKVSRRETLTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01129013;
90% Identity: iTF_01129013;
80% Identity: iTF_01129013;