Basic Information

Gene Symbol
Trerf1_1
Assembly
GCA_031763485.1
Location
JARFOC010000559.1:43292-71309[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.6e-12 3e-08 35.9 0.1 2 46 765 809 764 809 0.96

Sequence Information

Coding Sequence
ATGTTTCCCGTGATGTGTGCATTTACCCAAAGTTACCCGCCGGAAGGGAATCATGAAAAGGATGCCGACAATAAGAAATGCGAGAAGAAAGACTCGACGGGCCCACCTCTTCAAACGGCGAGTGTGAGCGTCAGGGCGCTcatcgaagaaaaaataataaacaaacgcAACATAAATCCAACGCAAAATTCCACGGCGGAGGAGTCGCCTTCGTCCCGCACTTCGGCGCCTCCGCTCTTTCCACTGACCGTGCATTCCCCGGCCACCGCCAACAGTTCGAACGCTGATACCGATACGAAAACAAATTCCTTCGCCGTCCCGGCGCCACCTCAACACGCGACGGATAAAGCTCGCAGACATTCCGACGCCGAGGCGTTCACGGTACCCAGGACACCCGCGAACAGCACGCAGCAGGAGGCCGAAGCGCTAGCCGATCTCATATTGAAAAGGGAAAAAGTAACAGTGAAACGCGCTACTTCCGATCCGGGCCAGACACCGCAAATCATCCAGTTTCAGTCTGGAGACTCCTTCACTTTGACCGGTGTCACTTATCAGTCAGACGATGGCGGTTACCTCTCGCCTAGTCTACAGGACGAAGTGTTTACTCAAGTGCAGGACACCATGTTGCTGCAAGGAGTTGACGCTCAACAGTTAGCGTCGATTCAGTTTCAAACGGAATCGCTACTGCAAGAGCATACCGAACAACAGCTCCAGGATATCGCTTTGGAGGATTATACGCAGTCGAGTCATTCAGTGAATCAGGATCTGCAAGCGGTACTGGATTCACCTTTACCGGAGAGTTTAGCTGATTATCAAACACAATCACCCGCCCAGTATACGGAATCACCTCACACGTCTTTAACTGCTCAAAGCCCTTTACAATCACCTCTGATTAGGCACGACTCTCCAGCTTATACATATCCAACCCCACCGGCTAGTCACGAAGGCCAGAGTCCGTGTTTCGGACAAAATACAATCCTACCTATGGTGTCTCCGAAGCAAAACGATTACATGACCAGAGATCTGGACCAAACTTCCCAAGCTTCATTGCTCTCCGCTGAATTTTTCTCAACTATGTCGAGTTCAGCGGCAGTTGAGGAAGCATTAGAGGAAGTTTTACCGGGAGAAAGTATAGCTGCCGATGACCTATACCCTTCCCTAACAAATTCCCCACCCCCACAATCTCCGTTGTCAATTGGGTTAACACCAGTACCTTCACCTCTATCGAATATACCCAACACATCGGCAGCTTCTCCGCATACCCAAACAAACTACGTGCCATCGCCTGGGAACATTCAGTTCGCTCATTATACCGTACAATCACACATGCTGCCAAATTCCGATGATCCACTGCTATCCAGCAGTCCAAAGGATTTCCAATCGAAGAAAAAATTTGAGTTCAATGGAGTGCCGTTGAAGGTGATCGGTAACGGAATTTTGGATGGTAATTTTACGGGCATACTTGTGGATACGAAcggtgaaattaaatttatacaaacgGGTGGCCCATTCCAAGcaaaaaatattgtgttaaCCACTCCGCACATTGTGACGACTACGACGCAGCACTTACAAAAAATGGAGGAAAGTGGAAAGTTAGCGTCAAGGTTGCCGAGAATCACCGCAATTCCGACGAAGCAACTACTGCAAAGGCCTAAATTTGAACCGATAAAGCAAGAAGATGACaacgatatatttattagtCCCACAACGATAACACCGAATCCTGCGAAAAACCCAAGGAAACGGCCTAGAGCTGAACCGCTACAATTGCCTATTTTACACCAATCAAGACTACGAGCCACTAGAAGTAAACCCCAAGGTTCAGCTAGATTCACTGCTCTACCAATATTGAATCCGACAAGGCAGGGTACTGGTTTGTACTGGAACTTGAAGCAAAAGCAGAATACAGAAAACCTTGAGTGTCAAGAAACAAACAATTGGAATGAACCAGTTCCAGAATCGGATTCCACGCCGCACATAAACGTAGGACCGCAATTTCAATGCAAAATCCCGTCTTGCAGCCGAGACAATAGGCACACACACAAACCAAACCGCGAAGATTTACTATGGGATCCTGGTATTAACAACTCCACGGCTGCTGAGATCGACATGTATTTGGACTTCGCCTGCTGTGCTGCAATCCCAGGCGGTGGTCGCAATCGAGAATATGCTATGCATGTTCTTCATTTAACGGGCGGTAACATACACGAAGCGATGTTAAAGCTGATGCAGCCCACACCATCGCTGCCATGCGATAATCCACTACATTATTACCACTACAGTGAAAGTGACAAGTGGACAGTTTCGGAAACGGAAATATTCCACCAAGCATTGCTCAAACACGAAAAAGACTTTGCTGCAATTGCTCAAGAGGTTGAAACTAAGACTATCAAGCAATGTATCCAGTTTTACTACGTGTGGAAGAAAGTGTGTGTGGATGAATATAAGGAACTGAAACAAATGCGTGAAAGGAAGTCAGGCATTGTTAAAATGGCTGAGAAcgattttgaagaaaaacctTATCCAGATGCCAAATTATTAGGGATAGCAGATACCGGATCACCGATACAAGATCACCGGAATTTTATATGCGAATATACAGACTGCTCAGCTAGTTTTAATTCTAGGGCTGCCCTGAACGGTCACATAAGAATCCACGGCGGCACGGCTAGAAACTCCCCCACTTATTCCCACGTCTCGCACGATAGACGGCCACCTTCGGTTACGTCATCTCTCTGCCACACGACCGATCCCACCGAAGATTATCCGTGTAAGATATGCGGGAAagTGTTCACGAAAATTAAAAGTCGTAGTGCTCACATGAAATCCCATCGACCGCCTGACGCAGAACCAGTTAGACGCAAAGAGAGGGATGTCGTGGTGTCTTCTAACTTCGAAGCTTCTGTACCGAGTCCTTTCAGCACTTAG
Protein Sequence
MFPVMCAFTQSYPPEGNHEKDADNKKCEKKDSTGPPLQTASVSVRALIEEKIINKRNINPTQNSTAEESPSSRTSAPPLFPLTVHSPATANSSNADTDTKTNSFAVPAPPQHATDKARRHSDAEAFTVPRTPANSTQQEAEALADLILKREKVTVKRATSDPGQTPQIIQFQSGDSFTLTGVTYQSDDGGYLSPSLQDEVFTQVQDTMLLQGVDAQQLASIQFQTESLLQEHTEQQLQDIALEDYTQSSHSVNQDLQAVLDSPLPESLADYQTQSPAQYTESPHTSLTAQSPLQSPLIRHDSPAYTYPTPPASHEGQSPCFGQNTILPMVSPKQNDYMTRDLDQTSQASLLSAEFFSTMSSSAAVEEALEEVLPGESIAADDLYPSLTNSPPPQSPLSIGLTPVPSPLSNIPNTSAASPHTQTNYVPSPGNIQFAHYTVQSHMLPNSDDPLLSSSPKDFQSKKKFEFNGVPLKVIGNGILDGNFTGILVDTNGEIKFIQTGGPFQAKNIVLTTPHIVTTTTQHLQKMEESGKLASRLPRITAIPTKQLLQRPKFEPIKQEDDNDIFISPTTITPNPAKNPRKRPRAEPLQLPILHQSRLRATRSKPQGSARFTALPILNPTRQGTGLYWNLKQKQNTENLECQETNNWNEPVPESDSTPHINVGPQFQCKIPSCSRDNRHTHKPNREDLLWDPGINNSTAAEIDMYLDFACCAAIPGGGRNREYAMHVLHLTGGNIHEAMLKLMQPTPSLPCDNPLHYYHYSESDKWTVSETEIFHQALLKHEKDFAAIAQEVETKTIKQCIQFYYVWKKVCVDEYKELKQMRERKSGIVKMAENDFEEKPYPDAKLLGIADTGSPIQDHRNFICEYTDCSASFNSRAALNGHIRIHGGTARNSPTYSHVSHDRRPPSVTSSLCHTTDPTEDYPCKICGKVFTKIKSRSAHMKSHRPPDAEPVRRKERDVVVSSNFEASVPSPFST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00434002;
90% Identity
iTF_00307824;
80% Identity
iTF_01124243;