Basic Information

Gene Symbol
Trerf1
Assembly
GCA_031893035.1
Location
JAVIWB010004446.1:292916-316877[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.9e-12 5.1e-09 37.2 0.1 2 46 852 896 851 896 0.97

Sequence Information

Coding Sequence
ATGGTACTGTTATCAAACATTTTTCCAAtgaattataatagtttttggGTGGAGTATTATTATGCGCAGACGCAGCAAAACACTTCCAACAAAACAACTGTAACTTCAACTAGTCCTCAGTCAAAGGTTTCCAGTACAACGTCTTCGAATAGTGCAAATAATTCTGGCAAAAATGAGCCGAAACCAGTGGAGTGTAACCTCTGTCATAGAAAGTTCAAGAATATTCCTGCCCTTAACGGACATATGCGATTACATGGTGGATATTTCAAGAAGGATGCTGACAATAAGAAATGTGAGAAGAAAGATTCTGTTGGCCCCCCTCTTCAAACGGCTAGTGTCAGTGTGCGTGCCCTTATAGAAgagaaaataatcaataaacgtAACATAAATCCATCGCAGAGTTCCACAACGGAAGAGACACCGCCGGCCCGTACATCTGCACCTCCTCTCTTTCCACTGACCGTGCATTCCCCAGTTACTAGCAACAATTCAAATCCCGACATTGATTCGAAATCCAATTCCTTCGCCGTTCCGGCGCCACCTCAACACACCACGGAAAAAACTCGCAGACATTCCGACGCCGAGGCGTTCACGGTACCTAGAACACCTAATAATAATACTCAACAGGAAGCCGAAGCACTGGCAGATCTCATACTAAAACGAGAAAAGGTTACCGTCAAACGTGCTACATCTGATCCGGGTCAGACTCCGCAAATTATACAATTCCAATCCGGTGATTCCTTCACTTTAACTGGAGTTACTTATCATTCAGAAGACGGTGGTTACCTTTCTCCAAGTTTACAGGATGAAGTATTCACTCAAGTGCAAGATACTATGTTGTTACAAGGTGTTGATGCGCAGCAGTTAGCTTCTATCCAATTCCAAACGGAATCCTTATTGCAAGAACAAGCAGATCAACAGCTTCAAGATATTTCCCTAGAAGATTACACACAATCGAGTCATTCTGTAAACCAGGATCTACAAGCGGTATTAGATTCGCCATTACCTGAAAGCTTAGCTGAATTCAGCGCCTTTCATTCAGGAGGAAGTTTAGATTTACCCTCGCCGAGTTATCAAACCCAATCACCTGCTCAATATACAGGATCTCCTCATACATCTCTTGCGACCCAAAGCCCCTTGCAGTCTCCGTTGGTGAGGCATGACTCTCCAGCATATACATATCCAACACCGCCTGCCAGTCATGAAGGTCAAAGCCCATGCTTTGGACAAAATTCAATGTTACCAATGGTCTCTCCTAAGCAAAATGATTATATGGCAAGAGACCTTGATCAAGCACCTCAAGCGTCCCTGCTTTCTGCAGAATTTTTTTCATCAACTATGTCGAGTTCAGCTGCAGTGGAAGAAGCCTTGGAAGAAGTATTACCTGGTGAAAGTATAGCAGCTGATGATTTATATCCATCCCTAACAAATTCACCACCTCCACAATCGCCGTTGTCAATAGGTCTAACGCCGGTGCCATCTCCATTGTCTAATATACCTAACACATCTGTTACATCGCCTCATACACAGACGAACTTTGCACCTTCCTCAGGCAATGTCCATTTCTCGCATTATACTTTACAGTCTCACATGATGCCAAATTCAGACGATCCATTACTTTCTAGCAGTcctaaagattttcaaacaaagaaaaaattcgattttaacgGCCTACCATTAAAAGTAATCGGAAATGGTATATTGGACAGTAACTTTACCGGAATCCTTTTGGATACTAAtggtgaaattaaatttatacaaaccAGTGGCGCCTTTCAAGCAAAAAATATAGTCCTAACGACGCCACACATAGTAACTACACAGAACGTACATAAGGTAGAAGAAGATATTAAACGGCAACAAAAGCAACAAAAGGTAGCTGTAGTGCCAACAAAACAACCAACACAAAGGCCTAAATATGAACACGTAAAACAAGAAGAAGGCAACGACGTATTTCTTAGTCCTACAACGATAACGGCAAGTCCTGTAAAAAATCCCCGAAAACGGCCTAGAGCGGAACCTTTACAATTACCTATTTTACATCAATCAAGACTGCGAGCAACTAGAAGTAAACCCCAAGGATCAGCTAGATTTACTCCTCTGCCCATATTAAATCCTACGAGGCAAGGAACTGGATTATACTGGACATTAAAACAGAAGCAGAATATAGAAAACATTGACAGTCAAGAGACAAACAATTGGAATGAACCAGTTCCAGAATCGGATTCAACTCCACATATAAATGTAGGACCACAATTTCAATGCAAAATTCCTCCTTGTAACCCAATGGATAGCAGATATGCACATAAGCCAAACCGGGAGGATTTACTTTGGGACCCTGGTATTAGTAATTCAACGGATTCAGAAGTTGACATGTACTTGGACTTCGCTTGCTGTGCTGCCATTCCAGGTGGTGGACGAAATAAAGAATACGCCATGCATGTCTTACACTTAACTGGTGGTAATATACACGAGGCGATGTTAAAACTTATGCAACCAACACCGTCATTACCATCCGAGAATCCTCTGCATTATTATCACTATAGTGAAAGTGATAAGTGGACGACTTCGGAAACGGAATTATTCCACCAGGCATTGCTCAAGTATGACAAAGACTTCGCTGCAATTGCTCAAGAGgttGAAACAAAGACTATCAAGCAATGTATCCAATTTTATTACATGTGGAAAAAAGTTTGTGTGGATGAGTATAAACGACTGAAACAGTTAAGAGAAAGAAGATCGGGTTTTCTTAAGTTAGCTGAACACGAACAAGAAGAGAAGCCGTATCCAGATGCCAAATTATTAGGGATAGCAGATACTGGTTCGCCTATACAAGACCATCGAAACTTTATATGCGAATTCACCGATTGTTCCGCAAGTTTTAATTCGAGAGCTGCATTAAATGGTCATATAAGAATCCATGGTGGTACAGCCAGAAATTCCCCCACGTATTCGCAGGTTTCGCACGAAAGGCGACCACCTTCTGTTACGTCTTCACTCTGCCACTCGACTGATCCCACCGAAGACTATCCTTGTAAGATATGTGGGAAGTAA
Protein Sequence
MVLLSNIFPMNYNSFWVEYYYAQTQQNTSNKTTVTSTSPQSKVSSTTSSNSANNSGKNEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDADNKKCEKKDSVGPPLQTASVSVRALIEEKIINKRNINPSQSSTTEETPPARTSAPPLFPLTVHSPVTSNNSNPDIDSKSNSFAVPAPPQHTTEKTRRHSDAEAFTVPRTPNNNTQQEAEALADLILKREKVTVKRATSDPGQTPQIIQFQSGDSFTLTGVTYHSEDGGYLSPSLQDEVFTQVQDTMLLQGVDAQQLASIQFQTESLLQEQADQQLQDISLEDYTQSSHSVNQDLQAVLDSPLPESLAEFSAFHSGGSLDLPSPSYQTQSPAQYTGSPHTSLATQSPLQSPLVRHDSPAYTYPTPPASHEGQSPCFGQNSMLPMVSPKQNDYMARDLDQAPQASLLSAEFFSSTMSSSAAVEEALEEVLPGESIAADDLYPSLTNSPPPQSPLSIGLTPVPSPLSNIPNTSVTSPHTQTNFAPSSGNVHFSHYTLQSHMMPNSDDPLLSSSPKDFQTKKKFDFNGLPLKVIGNGILDSNFTGILLDTNGEIKFIQTSGAFQAKNIVLTTPHIVTTQNVHKVEEDIKRQQKQQKVAVVPTKQPTQRPKYEHVKQEEGNDVFLSPTTITASPVKNPRKRPRAEPLQLPILHQSRLRATRSKPQGSARFTPLPILNPTRQGTGLYWTLKQKQNIENIDSQETNNWNEPVPESDSTPHINVGPQFQCKIPPCNPMDSRYAHKPNREDLLWDPGISNSTDSEVDMYLDFACCAAIPGGGRNKEYAMHVLHLTGGNIHEAMLKLMQPTPSLPSENPLHYYHYSESDKWTTSETELFHQALLKYDKDFAAIAQEVETKTIKQCIQFYYMWKKVCVDEYKRLKQLRERRSGFLKLAEHEQEEKPYPDAKLLGIADTGSPIQDHRNFICEFTDCSASFNSRAALNGHIRIHGGTARNSPTYSQVSHERRPPSVTSSLCHSTDPTEDYPCKICGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
-