Basic Information

Gene Symbol
Trerf1
Assembly
GCA_949128085.1
Location
OX421883.1:58516071-58529487[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.4e-12 1.6e-08 36.1 0.2 2 46 836 880 835 880 0.96

Sequence Information

Coding Sequence
ATGAATTCAAAACTCGTTAAAAGGGCCCAACAGAATGCTTCCAGCAAATCCAACGTTAGTTCCAGTAGTCCCTCGTCGAAAGTTACCAGCACGACGTCATCGAATAGTGGCAACAATGCTGGAAAGAATGAGCCGAAACCAGTCGAATGCAATCTGTGTCATAggaagtttaaaaatattccagCCTTAAACGGACATATGAGATTGCATGGTGGATATTTCAAGAAGGATGCTGATAATAAGAAATGCGAGAAAAAAGACTCGACGGGCCCACCTCTGCAAACGGCTAGCGTGAGCGTGAGGGCGCTCATCGAGGAGAAGATAATAAACAAGCGCAATATAAATCCAACGCAAAATTCCACGGCGGAAGAATCGCCTTCGTCCCGCACGTCGGCACCCCCGCTCTTTCCACTGACCGTGCATTCCCCGGCCACCGGCAACAATTCGAACGCTGATACCGATACGAAAACGAATTCCTTCGCCGTCCCGGCGCCACCTCAACACGCGACGGACAAAGCTCGCAGACATTCCGACGCCGAAGCGTTCACGGTACCCAGAACACCCACGAACAGCACGCAGCAGGAGGCCGAAGCGTTAGCTGATCTCATACTGAAAAGGGAAAAAGTAACGGTTAAACGCGCCACTTCCGATCCGGGCCAGACACCTCAGATAATCCAGTTCCAATCCGGAGACGCTTTCACGCTGACAGGTGTCACTTATCAATCAGACGACGGCGGTTACCTCTCGCCTAGTCTACAAGACGAAGTGTTCACGCAGGTGCAAGATACCATGTTACTGCAAGGAGTCGATGCCCAGCAGTTAGCGTCGATACAATTCAAGACGGAATCGTTGCTGCAGGAGCACACGGACCAACAACTTCAGGATATCGCGTTGGAGGATTACACGCAATTGAGTCATTCGGTGAATCAGGATTTGCAAGCGGTGCTGGATTCGCCTCTGCCGGAGAGTTTAGCCGAATTCAGCGCCTTCCATTCGAGTGGGAGTCTAGATTTGCCTTCTCCGAATTATCAAACGCAATCACCTGCTCAGTACACAGAATCGCCTCATACGTCGCTAGCAGCTCAAAGTCCTTTACAATCCCCTTTGATCAGGCACGATTCTCCAGCATATACATATCCAACCCCACCGGCTAGTCACGAAGGGCAAAGTCCGTGCTTCGGACAGAATACGATATTACCCATGGTGTCTCCGAAGCAAAACGATTACATGACCAGAGATTTGGACCAAACGCCTCAAGCTTCTTTACTCTCCGCTGAATTCTTTTCAACTATGTCGAGTTCCGCGGCAGTCGAAGAAGCCCTGGAGGAAGTTCTACCCGGAGAGAGTATAGCTGCCGATGATCTATACCCATCCCTAACGAATTCTCCACCACCACAATCGCCCTTATCGATCGGGCTGACTCCAGTCCCTTCGCCTCTATCGAATATGCCTAACACATCGGTGCCCTCACCGCATACCCAAACGAACTACGTACCGTCACCGAACAACGTTCAATTCTCCCATTACACCTTACAATCACACATGCTGCCAAATTCGGACGATCCGCTGCTATCCAGCAGTCCCAAGGACTTCCAATCGAAGAAGAAATTCGAATTCAACGGAGTTCCGCTGAAGGTGATCGGTAACGGGATTCTGGATGGGAATTTCACGGGTATCCTGGTGGATACGAAcggtgaaattaaatttatacaaacTGGTGGCGCATTCCAAgcgaaaaatatagtactaacTACACCGCACATTGTGACGACGACGCAACCGGTACAAAAGACGGAGGAAGCGACGAGGCAAGCGCAAAGATTGCCGAGAATTACCGCGATTCCGACGAAGCAACTATTGCAGAGGCCTAAATATGAACCGATAAAGCAGGAAGACGACAACGATATATTTATTAGTCCTACAACGATAACACCGAACCCTGTAAAAAATCCAAGAAAACGGCCTAGAGCAGAACCGCTACAATTGCCTATTTTACACCAGTCACGATTACGGGCTACAAGAAGTAAACCCCAAGGTTCGGCTAGATTTACGCCTCTGCCTATTCTGAATCCAACGAGACAAGGGACTGGTTTATATtggaatttgaaacaaaaacaaaatacagAAAACCTTGAGTGTCAAGAAACAAACAATTGGAATGAACCAGTTCCAGAATCGGATTCCACGCCGCACATAAACGTAGGACCCCAATTTCAATGCAAAGTCCCTCCTTGCAGTCAAGACCATAGGCACTCGCATAAACCGAACCGTGAAGATTTACTATGGGATCCCGGTATTAGCAACTCCACGGATGCGGAGATTGACATGTATCTGGACTTCGCTTGCTGTGCTGCAATACCAGGTGGAGGACGCAATCGAGAATACGCCATGCACGTTCTCCATTTAACCGGGGGTAACATACACGAAGCGATGTTGAAACTCATGCAGCCTACTCCATCATTACCATCCGATAATCCATTACATTACTACCACTATAGCGAAAGTGACAAGTGGACGGTCTCCGAGACGGAATTATTCCATCAAGCGTTGCTCAAACACGAGAAAGACTTTGCTGCAATTGCTCAAGAGGTTGAAACCAAGACTATCAAGCAATGTATCCAGTTTTATTACGTGTGGAAGAAAGTCTGCGTAGATGAATACAAGGAATTGAAGCAAATGCGTGAAAGGAAATCGGGGATTGTTAAGTTGGTCGAGAACGAATTAGAGGAGAAACCTTATCCAGATGCCAAATTATTAGGGATAGCAGATACCGGGTCACCTATACAAGACCACCGGAATTTCATATGCGAATACGCAGACTGCTCGGCTAGTTTCAATTCTAGGGCGGCACTGAACGGTCACATAAGAATCCACGGTGGTACGGCGAGGAATTCCCCCACTTATTCCCACGTTTCGCACGAAAGGCGGCCGCCTTCGGTAACGTCGTCGCTTTGCCACACGACCGATCCCACCGAAGACTATCCGTGTAAGATTTGCGGGAAGGTGTTCACGAAAATAAAAAGTCGTAGCGCTCACATGAAGTCTCATCGGCCGCCTGACGCAGAACCAGTCAGACGTAAGGAGAGGGATGTTGTGGTGTCTTCTAACTTCGAGGCTTCTGTACCGAGTCCTTTCAGCACTTAG
Protein Sequence
MNSKLVKRAQQNASSKSNVSSSSPSSKVTSTTSSNSGNNAGKNEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDADNKKCEKKDSTGPPLQTASVSVRALIEEKIINKRNINPTQNSTAEESPSSRTSAPPLFPLTVHSPATGNNSNADTDTKTNSFAVPAPPQHATDKARRHSDAEAFTVPRTPTNSTQQEAEALADLILKREKVTVKRATSDPGQTPQIIQFQSGDAFTLTGVTYQSDDGGYLSPSLQDEVFTQVQDTMLLQGVDAQQLASIQFKTESLLQEHTDQQLQDIALEDYTQLSHSVNQDLQAVLDSPLPESLAEFSAFHSSGSLDLPSPNYQTQSPAQYTESPHTSLAAQSPLQSPLIRHDSPAYTYPTPPASHEGQSPCFGQNTILPMVSPKQNDYMTRDLDQTPQASLLSAEFFSTMSSSAAVEEALEEVLPGESIAADDLYPSLTNSPPPQSPLSIGLTPVPSPLSNMPNTSVPSPHTQTNYVPSPNNVQFSHYTLQSHMLPNSDDPLLSSSPKDFQSKKKFEFNGVPLKVIGNGILDGNFTGILVDTNGEIKFIQTGGAFQAKNIVLTTPHIVTTTQPVQKTEEATRQAQRLPRITAIPTKQLLQRPKYEPIKQEDDNDIFISPTTITPNPVKNPRKRPRAEPLQLPILHQSRLRATRSKPQGSARFTPLPILNPTRQGTGLYWNLKQKQNTENLECQETNNWNEPVPESDSTPHINVGPQFQCKVPPCSQDHRHSHKPNREDLLWDPGISNSTDAEIDMYLDFACCAAIPGGGRNREYAMHVLHLTGGNIHEAMLKLMQPTPSLPSDNPLHYYHYSESDKWTVSETELFHQALLKHEKDFAAIAQEVETKTIKQCIQFYYVWKKVCVDEYKELKQMRERKSGIVKLVENELEEKPYPDAKLLGIADTGSPIQDHRNFICEYADCSASFNSRAALNGHIRIHGGTARNSPTYSHVSHERRPPSVTSSLCHTTDPTEDYPCKICGKVFTKIKSRSAHMKSHRPPDAEPVRRKERDVVVSSNFEASVPSPFST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00434002;
80% Identity
iTF_00308452;