Basic Information

Insect: Osmia bicornis
Gene Symbol: -
Assembly: GCA_907164935.1
Location: NC:9866264-9873776[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.6 1.6e+02 3.5 0.5 1 23 79 104 79 104 0.95

2 16 0.26 16 6.6 1.9 2 23 117 138 117 139 0.94

3 16 9 5.5e+02 1.8 3.7 1 23 145 167 145 167 0.97

4 16 0.057 3.5 8.7 0.5 2 23 173 194 172 194 0.97

5 16 0.32 20 6.3 8.5 2 21 472 491 471 494 0.94

6 16 3.8 2.3e+02 3.0 1.0 1 23 559 581 559 581 0.82

7 16 0.088 5.4 8.1 0.2 1 23 788 810 788 810 0.94

8 16 0.0085 0.52 11.3 0.3 1 23 818 840 818 840 0.98

9 16 0.2 12 7.0 1.1 2 23 936 957 935 957 0.96

10 16 0.16 10 7.2 0.5 3 23 969 989 967 989 0.96

11 16 0.0052 0.32 12.0 0.2 1 23 1066 1088 1066 1088 0.98

12 16 0.059 3.6 8.6 0.3 1 23 1185 1207 1185 1207 0.97

13 16 8.5e-05 0.0052 17.6 0.6 1 23 1213 1235 1213 1235 0.97

14 16 0.0087 0.54 11.3 2.6 1 23 1282 1304 1282 1304 0.97

15 16 0.0014 0.088 13.7 1.7 1 23 1310 1332 1310 1332 0.99

16 16 0.63 39 5.4 2.0 2 23 1423 1444 1422 1444 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.6	1.6e+02	3.5	0.5	1	23	79	104	79	104	0.95
2	16	0.26	16	6.6	1.9	2	23	117	138	117	139	0.94
3	16	9	5.5e+02	1.8	3.7	1	23	145	167	145	167	0.97
4	16	0.057	3.5	8.7	0.5	2	23	173	194	172	194	0.97
5	16	0.32	20	6.3	8.5	2	21	472	491	471	494	0.94
6	16	3.8	2.3e+02	3.0	1.0	1	23	559	581	559	581	0.82
7	16	0.088	5.4	8.1	0.2	1	23	788	810	788	810	0.94
8	16	0.0085	0.52	11.3	0.3	1	23	818	840	818	840	0.98
9	16	0.2	12	7.0	1.1	2	23	936	957	935	957	0.96
10	16	0.16	10	7.2	0.5	3	23	969	989	967	989	0.96
11	16	0.0052	0.32	12.0	0.2	1	23	1066	1088	1066	1088	0.98
12	16	0.059	3.6	8.6	0.3	1	23	1185	1207	1185	1207	0.97
13	16	8.5e-05	0.0052	17.6	0.6	1	23	1213	1235	1213	1235	0.97
14	16	0.0087	0.54	11.3	2.6	1	23	1282	1304	1282	1304	0.97
15	16	0.0014	0.088	13.7	1.7	1	23	1310	1332	1310	1332	0.99
16	16	0.63	39	5.4	2.0	2	23	1423	1444	1422	1444	0.97

Sequence Information

Coding Sequence: ATGTCAGGAAGGCTACCTCGATTGCGTGCACTTCGTCCACGACCTCAGCAACTGAAAATTGAACCGCATAAGGAAAGTAACCTTAAAGAAACTCGACAGGAAGTCGCGATGCGGGAATACGAGTTACAGGAGAGTTCCGAGGAAATTTCATACGATGTCAAAGGCAATAGCTCTGTAAGGAACAGTCTGAAACGTGAACACGAGGGATACGATTGTTCGGGATCTTCGCAAAATTATGAATGTAAAACTTGTAAACCCTCAAAGCCCCTGTCTAATCTTAAAGCGTATCTTGatcatttgaaaaaagaaCACAAACAAAAGgGAAAATTTATACGCGATACTGGAAATCGATGTTCCATGTGTTCATATGTTTCCCTAAATTCAAGGGATCTTGAAACTCATCAGAGAGTACATCATTTGAAAAGAAGATTTTTTAGATGCGCTAAATGTTCTTATGTCACGCATGTACGTGCTCGTTACACAAAGCACGTGAAATATCATTCCATGCCAATGATTAAGTGCGATGCTTGTGACTTTCGTACACCGTACAAGTGGAATTTAGACAGGCACACCAGGAATCATGGAGGAGGAGGAGCTTTCCAATGTCGTGCTTGCAATTTTACAGCTGATATCAGGCAGAGTTTAACAGTGCACGAAACCAATCATCACGAACCTCCTGTGAGTCAAACAAATCGCAAATCTAACACACCTTTTGAGCGTAAACCAAGAAATAGCCCTAAGCGTTACAACCAGGTGGGTGCAAGTGATTTTCGAGATTCGTTACGCATATCTGGAAGTACAAGCGTGTCGATCAGTCCTGGAGATTCGTACTCGATTTCTGACCAGGCTTTGGAAGATAAAAGAAGTGCAATGGCAAATGCCGAATGTATAGCGTTAAAATGCGAGGAGAAAGGTTGTCAATTTATTACAGCATGGGATTCTGAAATGCAACGACATCTGGCAGAATGTCATGCTCCAATTACACCGAATAAATCTAAAAAACCACTGCCAATGTTAATACCTTTAAGCCCTGCTAAATCTGGCAGCAGCAACACCAGTGGATCTTCGGCAACATTATTGAAAGTTCCGCGTGTGAGGGTAAGGCCGGAACTTGCACAAATCGCAAGAGACACCGAACTAGCCAAGTTGTATGGAAATAAAGAAGTGAGAAATTTAAAGAAGGATGCAAATAATGCGGcagatttatttgaaaaaaaaaatgcgtCCTTCTTTGATAAGCTAAAGGAAAAGCTTACAACGTCGGCGTCAATTAATAACGGAGTACCAGAGGTAGCTGTAAGTACTACGAACGATTTGAAATGCTGGTGTACTTTTAAAGCTAGTAGCATGGAAGAGCTGGCTTGTCACAAACAAACACACCACACCGCTCTCAGTGTATCTGTGGGTACAACGCGTTGTCCTAAGTGCAGAAGACGTTGCAAAAGTTCGACTGATCTACAAGTGCATATGCAGTGTTGTCACTCGACAAGCAACAATACGTCCATACACAATAGCTtagaaaaaatatcaaattgtTCAGAACTCCGTGTGACCTCGTATCGCGGTGAATATACATTTCCTGCGCAAACGGATTGGGACATTAATCTCAGCGGACTGAATTCTTCTGGATCATCGGTTGAAGGCACCTCGACGCATCCATGTGGCCGACGGGTATTTAAATGCCCGCATTGTCCATTTTGGGCATCCACCGCAAGTCGTTTTCATGTTCATATTGTCGGTCATTTAAATCGGAAGCCATTCGAGTGTTCCCTATGCGCGTATCGCTCTAACTGGCGATGGGACATCACAAAACATATTAAACTTAAAGCAGCTAAAGATCCAGTTCATATGACTGCCACGGTACTTATGACGGATGAAACAGGTCGACGGAATTATTCCAAATATAACAAATACCTTGCACAGGTCGAACAACAATCGTGGGACGAACAAAACATGGAGGAGCGTAACGTAGAAGAAACAAATTCTGACGAACCACCGACAAAGTTGTTAATAATGAACACCGATGAATATTTACAAGCACCCGAACTTACGACTACTCCGATTTCGATAATGTCTACGAACGAAGGAAATCATAATGTTAACGCTATTAATATTGGACTAAGGCCACCTCCCCCTCTGAAAGCTGCTGCTAGAAATCGTGGTCAATCGTtgcttaaaaataatttgaattctACAAGTCAGCCGAGTACATCTACCTCTGCTACGAGTTCGGAAGAAAATAAACGTACAATGTGGAAGTGTAAGCGTTGTAATTTTCGACATTCCAATAGAGAAACTGTATCGTTGCACGTTAAGTCTCATAGTGAATCGGAGCAACGatacgaagaagaaaaaAATGCATTTAGCTGCGGAGATTGTCCATATTCTGCATCCGATGCGGCTACTTTATCGATGCACCGAGTTCATCATCGTCCAAATTTGGAAGCAATTTTCAAATGTTATTTATGCCCTTATTACGTTAGCACAAAAGCGGAGCTTTTGGATCATGTTAGACTTCACGGAGAAGAACTTGCTGTTGTACATCAACAGAATATGGATTATAATTTTTCACCTACTAAATCTAAAACGCAGCAACCATTAGGAGAAGATACGAATCGTATGAAAGGAGAGAAATCTGTGGAACAAGTGATACATATAACAACGCAAAATAACGTGACTTGTATCACAAGTGCCTCAAAAAGTAGTTCCAGTGTACCTCCGCCGTTACTTCTGGATACCCGAGCACTGCCTGAAGCTCCGTTAGTATGGGTGTCCCGACCGGATGGTACACTTACGAAGATGTTAAAATGTCGTCACTGCCCTTTTGTGTCTTCGCGACGTGCCGAAGTTCGAGATCACGAAAGCATGCATCTCGATTCTCCTGGTAATGGTCCTGTGATCGCATGTACCGATTGTAGTTTTACTTGTACGCGACGAGAAGTAATGGTCGCGCACATAGACATGCATTCCGGTTCTTTAGGTACCGTTCATTGTTTAGTAGACGATTCGAGGCCAGATTCGCAGCAGTTGATCGATTTGACTGCGCTTCTCGGATTCACGCATTCCCCTGTATTGGGCTCGGAGCCTGATCTACGTGATTCCAGGCTTGTGCATTGTTGCAGTAAATGCCCAGCGCGATTTCTTTGCGAGAAAGAATTAAGAATTCATTTGCGATATCATTCAACGGAATTGGCTTACTCTTGCCAGTGGTGTTCTTACGCTGCTCGACAACCAGCTCACCTTCTAGCTCATCAGAAAGCACATTCGACCGAGTACCAAGAACGTACCAAGTACTTGTTATCACTGTACGGTTACTCGCAACGTTATCCACCTCCTACCACAGCCTGCGTCGAAACAAATGGCCAAGGCACAAATAATTCAACGCCTACCGTTGCATGGATCGTAGTAGAAATTACGGAGACTTCGAGTAGCAGTTTCAATAGTAATGGTAATagtaacaacaacaacaacaacaacaacaacaacagcagcaacaacaacaataacagCAATAATAACAACGCAAACCAACGAAATCAAGGAAATCAAGTATTCACTTGTGCCAAGTGTCCGGCTCGTTACTTCAAACTCGATGCTCTGGAGTATCATATGACTTTGCATGGATCCAACAACAGATtcaaatgcaccgaatgcgaTTACTCGTCGAAGACAGCTCAGAATTTGGTAAAACATCAAGTGGTTCATAGACGACAGAATGATACGAACGATGTAACTTCGAATCTGAGTCCGCCACCCGATCCTCAGTTTGGAATCTTTATGCGTGGCAATCCGAATTTCGTATACCCTGGTTACTTGAGGAATGGTCGTTTGAAAGAGAAACGTTACAAATGTCACAAATGTCCTTCCGCTTTTGAGAAACGAGAACAGTATAGAGTTCATTTGACGTTGCACGGAGCGAAACAAAGATATCGTTGCGACACTTGTGATTATTCTGTCAAATATTATGCTAATTACATACAGCATTTGAAGAAGCATCAAGCAAATGCCGAAGCGCAAGCGTCGCGGAGGCAATTCGAAGATGACACGATCACCATCGATAGCGATACAGTTTCCGATAGGGAATCTATATCTCGTTCAGGAAAGACTCTTAAATCGTCGAATAATTCAGCTGCAACAATGTCTACGAACGGAATATCAATGTTAAATTACGGTGGAGTTCAAGCTTCGAATCAAGACAAGCAGTCTTTAATGTTGTTGCAAAAGAAAGGTATACTGGTATCGTCGAACGACGAAGTGGAAACGTTACGCTGCCAAAGTTGCCCGTTCTCCACCTGTGACAAAGAAGCGATGGACGCTCATAAGCGTCGACACGGTATTGAAAGAATGACGCCATCCTGCCCCCATTGCGACTACATCCCTCGGAAAGATGAGAACGTTGGTGAACATATAAGACTACATTTCACAAGACTTTACAAACCGGAATCCTATCTTATTATAGAGCTTTTAACTTTGACAATGAAGAAAATAGCATCAAATGGAAAGGAAGAGAAACAGAAGGCTGCTGAATTACTTTTTAAGGAGTACGCGGATGGAAGGTTCTTTCCATTCGCTGATACAAATGCATTTGGTAGCCCTTCAAATAGTCACAAGGAAAAGGTTATAGTAGATCCGAATACCGGCGAAACGAAACATCATTTTCCTCTTTAA
Protein Sequence: MSGRLPRLRALRPRPQQLKIEPHKESNLKETRQEVAMREYELQESSEEISYDVKGNSSVRNSLKREHEGYDCSGSSQNYECKTCKPSKPLSNLKAYLDHLKKEHKQKGKFIRDTGNRCSMCSYVSLNSRDLETHQRVHHLKRRFFRCAKCSYVTHVRARYTKHVKYHSMPMIKCDACDFRTPYKWNLDRHTRNHGGGGAFQCRACNFTADIRQSLTVHETNHHEPPVSQTNRKSNTPFERKPRNSPKRYNQVGASDFRDSLRISGSTSVSISPGDSYSISDQALEDKRSAMANAECIALKCEEKGCQFITAWDSEMQRHLAECHAPITPNKSKKPLPMLIPLSPAKSGSSNTSGSSATLLKVPRVRVRPELAQIARDTELAKLYGNKEVRNLKKDANNAADLFEKKNASFFDKLKEKLTTSASINNGVPEVAVSTTNDLKCWCTFKASSMEELACHKQTHHTALSVSVGTTRCPKCRRRCKSSTDLQVHMQCCHSTSNNTSIHNSLEKISNCSELRVTSYRGEYTFPAQTDWDINLSGLNSSGSSVEGTSTHPCGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIKLKAAKDPVHMTATVLMTDETGRRNYSKYNKYLAQVEQQSWDEQNMEERNVEETNSDEPPTKLLIMNTDEYLQAPELTTTPISIMSTNEGNHNVNAINIGLRPPPPLKAAARNRGQSLLKNNLNSTSQPSTSTSATSSEENKRTMWKCKRCNFRHSNRETVSLHVKSHSESEQRYEEEKNAFSCGDCPYSASDAATLSMHRVHHRPNLEAIFKCYLCPYYVSTKAELLDHVRLHGEELAVVHQQNMDYNFSPTKSKTQQPLGEDTNRMKGEKSVEQVIHITTQNNVTCITSASKSSSSVPPPLLLDTRALPEAPLVWVSRPDGTLTKMLKCRHCPFVSSRRAEVRDHESMHLDSPGNGPVIACTDCSFTCTRREVMVAHIDMHSGSLGTVHCLVDDSRPDSQQLIDLTALLGFTHSPVLGSEPDLRDSRLVHCCSKCPARFLCEKELRIHLRYHSTELAYSCQWCSYAARQPAHLLAHQKAHSTEYQERTKYLLSLYGYSQRYPPPTTACVETNGQGTNNSTPTVAWIVVEITETSSSSFNSNGNSNNNNNNNNNNSSNNNNNSNNNNANQRNQGNQVFTCAKCPARYFKLDALEYHMTLHGSNNRFKCTECDYSSKTAQNLVKHQVVHRRQNDTNDVTSNLSPPPDPQFGIFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCDTCDYSVKYYANYIQHLKKHQANAEAQASRRQFEDDTITIDSDTVSDRESISRSGKTLKSSNNSAATMSTNGISMLNYGGVQASNQDKQSLMLLQKKGILVSSNDEVETLRCQSCPFSTCDKEAMDAHKRRHGIERMTPSCPHCDYIPRKDENVGEHIRLHFTRLYKPESYLIIELLTLTMKKIASNGKEEKQKAAELLFKEYADGRFFPFADTNAFGSPSNSHKEKVIVDPNTGETKHHFPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00762862;
90% Identity: iTF_01123326;
80% Identity: -