Obic009688.1
Basic Information
- Insect
- Osmia bicornis
- Gene Symbol
- -
- Assembly
- GCA_907164935.1
- Location
- NC:5592790-5599333[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.1 1.3e+02 3.7 0.1 3 23 24 44 23 44 0.94 2 15 7.3 4.5e+02 2.1 4.2 1 23 869 892 869 892 0.81 3 15 0.0069 0.42 11.6 3.3 3 23 982 1003 981 1003 0.97 4 15 0.014 0.86 10.6 0.1 2 23 1016 1037 1015 1037 0.97 5 15 0.00015 0.009 16.8 2.5 2 23 1040 1061 1039 1061 0.97 6 15 0.021 1.3 10.0 0.3 1 23 1067 1089 1067 1089 0.95 7 15 4.2e-05 0.0026 18.5 4.5 2 23 1096 1117 1095 1118 0.95 8 15 0.56 35 5.6 3.7 5 23 1131 1149 1130 1149 0.97 9 15 3.8e-05 0.0023 18.7 1.5 3 23 1156 1177 1155 1177 0.97 10 15 0.017 1.1 10.3 0.3 2 23 1193 1213 1192 1213 0.97 11 15 0.3 19 6.4 0.3 2 13 1219 1230 1218 1231 0.90 12 15 6.7e-05 0.0041 17.9 2.4 1 23 1247 1269 1247 1269 0.99 13 15 0.0058 0.35 11.8 3.4 1 23 1275 1297 1275 1297 0.97 14 15 7.2e-06 0.00044 21.0 3.9 1 23 1303 1325 1303 1325 0.99 15 15 0.0025 0.15 13.0 6.3 1 23 1331 1353 1331 1354 0.96
Sequence Information
- Coding Sequence
- atgtgTAAACAAGATATCACAGACACCATGGATGCAACAAGCAATGGAACACCAGGGAGTGCAGTGGCTTGTCCAGTATGTACCCTCTACTTACGCGAGGGTATCAGCTTACAAAGACATTTGGACACTCATCCCAAGGAACAAGTTATTGAAGCTCTTATTAAAGCTAGTACTAATTCTTTACATTTGCAACAGACTCAATTGTCACCAACTGCACCTCCAGCATCTCCAGCTATACAATCACCACAAAGTACATCTCAAGTTACACAGAATACTCATGTATCAGCTCAATCTCCATATCCTATAGGACCTATTTTGAGGTCCCCTATTGGTACTGTAATGCCACCTCAGTTTGCTTCATTTAGTTATCAACAGTTTGTAAATAATGGCACTATGATGATACCACAATACGCGATGGGTCCACAAGCTAATCAGATGATGCAGATGCTCTATAATCCGTATGGTATGTACCAGCAACAACAGATACCAACTGTTCAGATGATCTCACCGGTCACAACTATATCTAATACAGCTAGAATTAGGCCAGTGGTGACTATGGCTGGTGAAACAAGTGGTAGAACTGCCATTGCTGTATCTGTAAATAATTCCGAGCCAAAACAAATTTTACCTGAATTTTACCTGAGCCAGAGGCAAGAGTCTGAACAAGTGTTACCAGACATCAATCTTCCAGTATCTCCCCCTGCATTAAATGAAGATAGCTCTATACAgcaaaatgaaaatggaaCTAGTACAATTCATGAACATGCAGAAGAAGCACACAGTTCAAGTGCTGCATCACATAATATGCAAAATGAATATGATAGCATTCCAAAAACATTAGAAATCACTTGTAATGTTGTTAATACTTCAGATGATAAAGTTGAAAGTGTTCTACCAGATATTGATGATGGAGAATCATCGCGTGTTATCACTGCAGATGTTCATTATGAATCATCAGAAATGCAGGAATATGTGCATAGATATAaagatgatgatgataataataaaattatcatgCCTGAAATATCATCTGTGGTTAGTGAGAGTGAAACTGATAAAACAACTAATGAAAAAGTTCCTCACAGAAAAGagataaatgaaaatcaaggTACCTCATCTGAAATGCCTAGAAAAGAATCGGTTCAACCTCAAGTAGAACAATTAGACCACCTTGTAATTACTATTGTGGCATCTGAATTTAATGGTGAATCAGAAAAAGAGTCCaatgataaaaagaaagatgaaGGTCTGATACAAAATTCTTCCCTTGAAAGAGCAGAAAGTGTAATTCATGAAACTAGTAATTCTAGTGAACATGATACCAGTTGTAAATCTgacatagaaataaaaattaatgagaGTTCAGAAACTTATCTAGATagtgatgaaaataaaaattcttgtCTTTTATATCATTATAAAAACAGTTTATCTGCACCTGCATCACCAGTGgtacaaagaaaatatagaaCATACTCGGTTCGTTCAGATTTTGGTTCGAATGAAAATCTGAATTCATGTCCAATTGGTTTTGATGCAAATACATTGCAAGATGAAGACGAAgaggatgaaaagaatgaagcagaaaataattttgatgaGGCAGATAtggaaatagaagaaataccTAGCCCACACACACCTTTTGTTAAATATGGAGAAAGTACAGATCATGTTAGATCGCATACTCCATTATCTGTAAGTAGTGGTATCTCTGTATTGAGAGTTAGAAAAGATCTCAGTAAACCATGTTCACCTGCATCAGTGCATTCATTTTGTCATATGGATGCTAATGACCTAAGTCATGATGAAGAAAGTAATGGAGCAATGGATACATCACCAGAAAAAGATCCTATTGATTGTTCTTCAATTGAACAAGATGTAAAAGCTGATCAATCAGAACTTTCTTTgtgtgaaaatgaaaagaaagtaGGAGACACAGCATATCAGTCTGTAATCACTGAGCATGTGAGTTCATTTCCTACAATTCATTCGCAACAATCAACATCCATAGAAGAATCATATAATGCAACAAATAAGAATCATAATCTTGTAAATTTGTCAGAATCTAGTGATATTGCAAGCAGTTCTGATTCAAAATGCTTTCATTCATCTAAATCAATTATACAAAAGCAATCAGTGGAACTTCTTAGTTTAAATGAGGATGCTCATGCAGGTCCAATGAATATGTTTGAATTAGATGGTCTTCAAATATTAGTTCCTAGTACATTTATAAGTGATTCTTCACAAAAAGCTGTTAGTGCAACCAGTCAACAATCTATGGCAAGTAGCGAAGGAGGAATAGGTGTAGATGAAGAAGTGAAAAGTATTAACATGAGGGCCGATGAAACTATGCCACCCAGAGGTGAATTATCAGAACAGGAAAGCAATGGGTGTACAGAACAATCAGCTTGGCAGTTGTATGCTGGTCACGAGTCGTCGTGTATGTCAACCTCTTATGATTTGATGGCACGTGAAAGTTGGGAAGAATCTGAAGGATCGGACAATGAAATTAGTGGCCCGTTATTAGATAGCAGATCTTTAGCTACACATTTTATCAGTTTATTCTTAGATCGAGATAGAAAAACACCGACAAAAAGAACATTTAAATGTTACCATTGTCCAGAAACATTTGATTGTCCGAAAGAACGTCGAGTACACAGTACTACCGTGCATCAAGAAGCTGGACCCAGTAGCAGTAGAGAATCAACAGATCAACCTgaaataaaagatattaagTTATTGGATGGTCGGATGAATGCATTTGACGATTTTTTTGTACCGGGTTTACATGTTCAGCAAGCTTACCATCAACAGCCACTTTTACATCAACAACCACTTTTACATCAACTACAACCACCGCAATCATTGGAATTAATAGCAAAAGTAGAATCTGATCAAAAGATTGAAACGTTGGTAATACCATCGAACATCGAAGTGCTTTGTACACTTTGTAATCAACGATTTAGTAGTGAAAAATCATTACAGTTACATCATAAAAGAGTACACGTTACCGAAACAGCGAAGAGAATTCGAGAGAGTACCAAGTGCCAGATATGTAACGAAGAATTTCCTTCAGTTTTACTATTTAATGCCCACCTAAAAATACATCCGTTAGAATGTAGCCAGTGTGGAAAGTATTTTTATaggaaacaaaattttaaattacacgTGAAAAGACATCTAGGAATCAAACCATTTCCGTGTACCGTTTGTGACAAAGCATTTTTGACGAAACAAAAATTAGACGAACATACTAATGGCCATACCGGGAATGCACCTGTCAAGTGTAATCTTTGCAATGAAACGTTTCGtagatattcaaatttaactCAACATAAGAATAGACATCATctgaatataaaaaagaaattgaaggaTTATATATGTCATTGCGGTGagatatttcatacaaagaaaaaattagcTTGGCATAAGGAGACGCACGATGAGAAACCGAAAGCATGTACATACTGTAACGAAAGATTCATTCACATGGCTAGCCTGACTCGACACATGCGTCGAGCTCATAACAGAAGATTTGTTCCCGATGCTCAAAGAGAGAATGAAAATGTTGAATGTCCCATATGTAAGTGTATTTATTTGCGATCTTCCTTAGCAGTACATATGCGAGTTCATAACGGCGAAAGACTAGAATGTCAAGTTTGCTCTAAAACGTTTAGTACTAAGTGGATACAATTGCACAAATGGACTCACGCTGCTCGTAGCACCAAACCTTTTAAATGTAATCAATGCAGTGCCGCGTTTAACCGGCACAGCGATTACACTGCTCATATGAATTCTCATAGAAATGTGCGTCCTTTTACCTGCAATTATTGCGGTGCGCAATTCATACGAAAGTATAATTGTTTAAGGCATGTAAAAGAACACGAGGAGAACAAAGCGTATACATGCGATGTTTGCAACAAAACGTTTCATAGATCATATTATCTAAAAGAACACTTGCGAGTACATTCAGGTGCCAGACCATATACATGTCATATTTGCGGAAAGTCTAGTGGTACGAAATCCAATCACAATAAACATGTCAGAATTCATCATGCACGCGAACCTGTAAATACCGAAAATTAA
- Protein Sequence
- MCKQDITDTMDATSNGTPGSAVACPVCTLYLREGISLQRHLDTHPKEQVIEALIKASTNSLHLQQTQLSPTAPPASPAIQSPQSTSQVTQNTHVSAQSPYPIGPILRSPIGTVMPPQFASFSYQQFVNNGTMMIPQYAMGPQANQMMQMLYNPYGMYQQQQIPTVQMISPVTTISNTARIRPVVTMAGETSGRTAIAVSVNNSEPKQILPEFYLSQRQESEQVLPDINLPVSPPALNEDSSIQQNENGTSTIHEHAEEAHSSSAASHNMQNEYDSIPKTLEITCNVVNTSDDKVESVLPDIDDGESSRVITADVHYESSEMQEYVHRYKDDDDNNKIIMPEISSVVSESETDKTTNEKVPHRKEINENQGTSSEMPRKESVQPQVEQLDHLVITIVASEFNGESEKESNDKKKDEGLIQNSSLERAESVIHETSNSSEHDTSCKSDIEIKINESSETYLDSDENKNSCLLYHYKNSLSAPASPVVQRKYRTYSVRSDFGSNENLNSCPIGFDANTLQDEDEEDEKNEAENNFDEADMEIEEIPSPHTPFVKYGESTDHVRSHTPLSVSSGISVLRVRKDLSKPCSPASVHSFCHMDANDLSHDEESNGAMDTSPEKDPIDCSSIEQDVKADQSELSLCENEKKVGDTAYQSVITEHVSSFPTIHSQQSTSIEESYNATNKNHNLVNLSESSDIASSSDSKCFHSSKSIIQKQSVELLSLNEDAHAGPMNMFELDGLQILVPSTFISDSSQKAVSATSQQSMASSEGGIGVDEEVKSINMRADETMPPRGELSEQESNGCTEQSAWQLYAGHESSCMSTSYDLMARESWEESEGSDNEISGPLLDSRSLATHFISLFLDRDRKTPTKRTFKCYHCPETFDCPKERRVHSTTVHQEAGPSSSRESTDQPEIKDIKLLDGRMNAFDDFFVPGLHVQQAYHQQPLLHQQPLLHQLQPPQSLELIAKVESDQKIETLVIPSNIEVLCTLCNQRFSSEKSLQLHHKRVHVTETAKRIRESTKCQICNEEFPSVLLFNAHLKIHPLECSQCGKYFYRKQNFKLHVKRHLGIKPFPCTVCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEIFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRENENVECPICKCIYLRSSLAVHMRVHNGERLECQVCSKTFSTKWIQLHKWTHAARSTKPFKCNQCSAAFNRHSDYTAHMNSHRNVRPFTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00962003;
- 90% Identity
- iTF_00963366; iTF_00962003; iTF_00964643; iTF_01123224; iTF_00962684; iTF_00964009;
- 80% Identity
- -