Obor002188.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- dmd-4
- Assembly
- GCA_902654985.1
- Location
- LR736858.1:4730678-4733728[+]
Transcription Factor Domain
- TF Family
- DM
- Domain
- DM domain
- PFAM
- PF00751
- TF Group
- Zinc-Coordinating Group
- Description
- The DM domain is named after dsx and mab-3 [2]. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4 [1]. The dsx DM domain has been shown to dimerise and bind palindromic DNA [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-25 2.5e-21 75.3 10.9 1 47 9 55 9 55 0.98 2 2 0.012 1.1e+02 2.8 0.9 29 35 231 237 229 244 0.86
Sequence Information
- Coding Sequence
- ATGCTGCAGAGCAATAGATCTGCCAGAGTACCAAAGTGCGCGAGATGCAGAAATCATGGGATGATATCTACCCTTAGAGGACACAAGAAGCAatgcatttacaaaaattgttcttgCACTAAGTGTGGCTTGATAAAGGAACGGCAAAGGATAATGGCAGCCCAGGTGGCATTGAAACGTCAACAAGCAGCCGAAGACGCTATAGCACTTCATCTAGCATCAGCAGAAAGCGGTACAACCTACGATTATCTCCCACCAGGTCGCATCTACGGCATGCAAGTAACTTCGCCAATGTCGGAGACATCGGAATGCGAATCGGAAAGCTCCAAATCAACCTCAGCTTCCGCGGATGACGTGCAAGTAACACCCGCATCAATAGAAATGCTTTGCAAgctgtttccaaataaaaagcGGGCGGTGTTAGAGCTAGTGTTGAAAAGATGCAATCACGACCTTTTGAAGGCGATCGAACACTTTAACATGTCAAATTCTAAGAAGAGTAACGCCGAAGAGAAGAAATCTGAAGCGCACGTCTCAGCATTCAAACCTGTTCATAGTAAAGTTGCCGGCCATGCTGGTACGGTACCTTTATTGACTGGGAGCAAAGTTTACATGCATAGTTTGTATccatttctttcattgtttaaCACCCAACCAGTTTTACCTAGTCCTGTGTATGTTCCGGGATTTTGCGAATGTGaacaatgcaaatttaatttgcataccAGCCAAAGATCGTAA
- Protein Sequence
- MLQSNRSARVPKCARCRNHGMISTLRGHKKQCIYKNCSCTKCGLIKERQRIMAAQVALKRQQAAEDAIALHLASAESGTTYDYLPPGRIYGMQVTSPMSETSECESESSKSTSASADDVQVTPASIEMLCKLFPNKKRAVLELVLKRCNHDLLKAIEHFNMSNSKKSNAEEKKSEAHVSAFKPVHSKVAGHAGTVPLLTGSKVYMHSLYPFLSLFNTQPVLPSPVYVPGFCECEQCKFNLHTSQRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01498912;
- 90% Identity
- iTF_00307924;
- 80% Identity
- -