Ogra029835.1
Basic Information
- Insect
- Orthosia gracilis
- Gene Symbol
- -
- Assembly
- GCA_947562075.1
- Location
- OX387277.1:2566095-2568437[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4e-06 0.00038 21.5 4.2 1 23 8 31 8 31 0.95 2 21 0.0016 0.15 13.3 0.9 2 23 37 59 36 59 0.94 3 21 1.7e-05 0.0016 19.5 0.3 2 23 68 90 68 90 0.97 4 21 3.9e-06 0.00037 21.6 2.0 2 23 99 121 98 121 0.95 5 21 1.5e-05 0.0014 19.7 2.5 2 23 129 151 129 151 0.96 6 21 4.7e-06 0.00045 21.3 2.4 2 23 160 182 159 182 0.96 7 21 6.6e-07 6.3e-05 24.0 1.1 1 23 188 211 188 211 0.98 8 21 3.9 3.7e+02 2.7 1.1 2 23 220 241 219 242 0.92 9 21 0.00024 0.023 15.9 0.7 1 23 254 277 254 277 0.98 10 21 0.022 2.1 9.7 2.7 1 23 302 325 302 325 0.97 11 21 0.83 79 4.8 0.2 2 20 333 351 332 353 0.91 12 21 0.017 1.6 10.1 2.2 2 23 362 384 362 384 0.95 13 21 0.00099 0.094 14.0 5.6 1 23 406 429 406 429 0.97 14 21 6.7e-06 0.00063 20.8 0.2 2 23 436 458 435 458 0.96 15 21 3.5e-05 0.0033 18.5 2.1 2 23 465 487 464 487 0.94 16 21 0.007 0.66 11.3 2.2 1 23 493 516 493 516 0.97 17 21 0.17 16 7.0 4.5 2 23 524 546 524 546 0.95 18 21 5.7e-05 0.0054 17.9 0.7 1 23 553 576 553 576 0.98 19 21 0.015 1.4 10.3 1.4 1 23 583 606 583 606 0.89 20 21 0.036 3.4 9.1 2.8 5 23 623 642 620 642 0.90 21 21 7.9 7.5e+02 1.7 1.1 1 12 692 703 692 706 0.83
Sequence Information
- Coding Sequence
- ATGTATCATAGCCAATTGGATTTCGTTTGCGACTACTGCTCAAGGACGTTCACAAGAAAATACAACTTACAAACGCATATAGAAAACTGTCACATCAATTCTTCTTGTCACTGTAGTATATGTGGCCAGAACTTTGGTAGTCCTGCCGGGTTACTGCAACACCTGTCGAGAGGCCACAATAACTATGGCCAACCCTTTCCAGAGTGCGAACTTTGCGGACGAATTTTTACTCGCAAACAGAATATTACTTCCCATATGATAACTGTACATCTTCAAGGGTTAGGTTACGAAATAAAGTGTCGTCTATGCGAAAAAACATTCACAACGGAACGCAATTTGAAACGACATATGAATCAACTACATAATCCAGATGTCGAGTATCCAACCTGCAACGATTGTCACAAGGTCTTCAAAGGCAAGCACTCCCTCATAGCACATATCCAGTCTGTTCACAATGTCACCGAAAAAGACGCGATCAAGTGTCATCTCTGCGAAAAAGTGTACACCAATAACAGAAACTTGAAGCGGCACATCGAAATGTTCCACGGCGAAAAGGGAGAGTTCCGATGTGACATCTGCCCGAAAGTATACACCTCAAACCAGAGTTTGAGACGCCATGCCCGTACAAGACATAGTACGGACAACCAGGAACATTTAACGTGCAATTTTTGCATGAAAGTTATCATCGGACGGGAGAACTTCGAAAGCCATGTGCAATTTCATCATCAAGACACGGAATTGGATGTTAAAACCGCTGAGTTTGTCTGCGAATATTGCGACAAGGGCTTCGACGAAGAACCTTGTTTGCGGCAACATGTGAAAACGGAACACTCGTTCAAAACTTTTTATAAGTACTGCAAGAAATCGTTGCTCAAACAGTACGGGATGGACACACGGACAATATACAACTGTGAATTCTGTCACTATTATTTTTTGAACGTCTACGAGCTTAAAGATCATATGCGAGTGAATCATGATACGGAATACTCTTTATCGACTTGCAACGTGTGCTTCACTAAGTTTTACAGTACGGTCACCATGTCTGCTCATAGAGAGATTTGTCTGCCGCCAGAAAACGTGAACTCTTGCAGCCACTGCGACAAACTCTTCACCGATATCTCCAGCTTAGAATTTCATACGAGAATCTTCCACCCGCAAGCTCAAATCGCTGACTCCAACATATCGTCTACGAATATGGATGACGAAGCCGTCTCATTCAAATGCGACCATTGTGACCGCGTCTACTATAGCGACAGGTCTTTAAAACATCATATAAAGTTGAAACATACCTCCGACGAACAGGTCGAATGTGAAATTTGTGGAAAAATATGCAGTAACAAGTATTATCTCGCTGCACATATTAAAATAGTTCACAACAACGATTCTTGGTCCCGTTGCGAATACTGTGACAAACAGTTTAAATCTAAAAGAAATATTCGAAGACATATTGAGTACACTCATCTAGGCATGCAGAGATACAAGTGCATCGAATGCGAGACCTTGTTCAAAGAAAAACGGAGTTTAAGAAAACATGTGCGCACTAAACATCCTGATTCGGCATCATTTCCTCAGTGTCACATATGTTACAAACGGTTCGAATCGGCCAAATCTTGTAAAATCCATCTGAAACTTGTGCATTCTTTTAACATGAACACCTACCCGTGTCACTTATGTTCCGTATCGTTTAGTTCGAACGAAGCTTTGAGTATACACTTACAGACAAAGCATCTAGCCGAAGACCAGATTTATAAATGCGAAGAGTGTAATTTAGTGTTCAAAGGGCAGGAAAAATTTGACGCACATAACGATGTCTGCCACGTCAATTTAGTCCCGGCGATCAAGCAGAAAGTGTTACCACGATGCATTCTCTGCATGAAAGACTTTAGTACCCGCAAAACTTTGAAACGACACATTAAAAAGTTCCACGAGGAATTCGATGTGGATGAATTAGCAACTTTCGGTTCTAGACGGAGAACTTTCACAGTGGACTGCGAGGACTGTATCAAGAACTTTAGCGACGATTTTCATTTGAACATATACAACAAAATCAAGCATTTAAGAGACACTGAAGTGTTTAAGTGCCAAACTTGCTTCGAATCCTACAATTCGTTAGAATTCGCGATTCAAAGGTATAAGGTCTTAAACGCCGATGCTTGTAAAAGCAAAATGATCCTAAGTGAGCTTTGTACCGCTGAAATGAGTGAGGAGGAGAATGATTTTTCTAGCTTCGGAGCTTTGCATGACATGTTGCCTGAAAGTACGACTGGGGATCTCAATATAAAGTGTGAACCCCTTGATGATGTGTTTGTGAGCGATATCAAGATGGAACCAGAGTCACCGTAA
- Protein Sequence
- MYHSQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCSICGQNFGSPAGLLQHLSRGHNNYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGYEIKCRLCEKTFTTERNLKRHMNQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNVTEKDAIKCHLCEKVYTNNRNLKRHIEMFHGEKGEFRCDICPKVYTSNQSLRRHARTRHSTDNQEHLTCNFCMKVIIGRENFESHVQFHHQDTELDVKTAEFVCEYCDKGFDEEPCLRQHVKTEHSFKTFYKYCKKSLLKQYGMDTRTIYNCEFCHYYFLNVYELKDHMRVNHDTEYSLSTCNVCFTKFYSTVTMSAHREICLPPENVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNMDDEAVSFKCDHCDRVYYSDRSLKHHIKLKHTSDEQVECEICGKICSNKYYLAAHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPDSASFPQCHICYKRFESAKSCKIHLKLVHSFNMNTYPCHLCSVSFSSNEALSIHLQTKHLAEDQIYKCEECNLVFKGQEKFDAHNDVCHVNLVPAIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEEFDVDELATFGSRRRTFTVDCEDCIKNFSDDFHLNIYNKIKHLRDTEVFKCQTCFESYNSLEFAIQRYKVLNADACKSKMILSELCTAEMSEEENDFSSFGALHDMLPESTTGDLNIKCEPLDDVFVSDIKMEPESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_01230865;
- 80% Identity
- iTF_01118565;