Ogra029835.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orthosia gracilis
Gene Symbol
-
Assembly
GCA_947562075.1
Location
OX387277.1:2566095-2568437[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.029 12 6.8 2.5 18 43 9 31 4 32 0.93
2 18 0.48 1.9e+02 2.9 1.8 17 44 36 60 31 60 0.81
3 18 0.0031 1.2 10.0 0.1 18 43 68 90 65 91 0.87
4 18 0.00012 0.05 14.4 1.6 17 44 98 122 95 122 0.91
5 18 0.0013 0.54 11.1 1.2 18 44 129 152 127 152 0.94
6 18 0.00017 0.067 14.0 1.3 15 43 157 182 153 183 0.89
7 18 0.0093 3.7 8.4 0.3 17 44 188 212 184 212 0.89
8 18 0.02 8 7.4 0.5 18 43 220 242 214 243 0.82
9 18 0.021 8.5 7.3 0.0 17 44 254 278 244 278 0.88
10 18 3.2 1.3e+03 0.3 1.0 14 43 299 325 284 326 0.75
11 18 0.66 2.6e+02 2.5 0.1 14 27 358 371 354 385 0.81
12 18 0.29 1.2e+02 3.6 2.9 17 43 406 429 400 430 0.89
13 18 7.8 3.1e+03 -0.9 9.8 10 29 428 447 420 459 0.72
14 18 0.0095 3.8 8.4 3.1 12 43 459 487 447 488 0.79
15 18 0.21 83 4.1 0.8 17 44 493 517 489 517 0.85
16 18 4.1 1.6e+03 -0.0 0.7 19 43 555 576 551 577 0.75
17 18 0.00019 0.076 13.8 1.6 6 43 606 642 604 643 0.82
18 18 0.46 1.8e+02 3.0 0.3 15 40 660 687 651 701 0.88

Sequence Information

Coding Sequence
ATGTATCATAGCCAATTGGATTTCGTTTGCGACTACTGCTCAAGGACGTTCACAAGAAAATACAACTTACAAACGCATATAGAAAACTGTCACATCAATTCTTCTTGTCACTGTAGTATATGTGGCCAGAACTTTGGTAGTCCTGCCGGGTTACTGCAACACCTGTCGAGAGGCCACAATAACTATGGCCAACCCTTTCCAGAGTGCGAACTTTGCGGACGAATTTTTACTCGCAAACAGAATATTACTTCCCATATGATAACTGTACATCTTCAAGGGTTAGGTTACGAAATAAAGTGTCGTCTATGCGAAAAAACATTCACAACGGAACGCAATTTGAAACGACATATGAATCAACTACATAATCCAGATGTCGAGTATCCAACCTGCAACGATTGTCACAAGGTCTTCAAAGGCAAGCACTCCCTCATAGCACATATCCAGTCTGTTCACAATGTCACCGAAAAAGACGCGATCAAGTGTCATCTCTGCGAAAAAGTGTACACCAATAACAGAAACTTGAAGCGGCACATCGAAATGTTCCACGGCGAAAAGGGAGAGTTCCGATGTGACATCTGCCCGAAAGTATACACCTCAAACCAGAGTTTGAGACGCCATGCCCGTACAAGACATAGTACGGACAACCAGGAACATTTAACGTGCAATTTTTGCATGAAAGTTATCATCGGACGGGAGAACTTCGAAAGCCATGTGCAATTTCATCATCAAGACACGGAATTGGATGTTAAAACCGCTGAGTTTGTCTGCGAATATTGCGACAAGGGCTTCGACGAAGAACCTTGTTTGCGGCAACATGTGAAAACGGAACACTCGTTCAAAACTTTTTATAAGTACTGCAAGAAATCGTTGCTCAAACAGTACGGGATGGACACACGGACAATATACAACTGTGAATTCTGTCACTATTATTTTTTGAACGTCTACGAGCTTAAAGATCATATGCGAGTGAATCATGATACGGAATACTCTTTATCGACTTGCAACGTGTGCTTCACTAAGTTTTACAGTACGGTCACCATGTCTGCTCATAGAGAGATTTGTCTGCCGCCAGAAAACGTGAACTCTTGCAGCCACTGCGACAAACTCTTCACCGATATCTCCAGCTTAGAATTTCATACGAGAATCTTCCACCCGCAAGCTCAAATCGCTGACTCCAACATATCGTCTACGAATATGGATGACGAAGCCGTCTCATTCAAATGCGACCATTGTGACCGCGTCTACTATAGCGACAGGTCTTTAAAACATCATATAAAGTTGAAACATACCTCCGACGAACAGGTCGAATGTGAAATTTGTGGAAAAATATGCAGTAACAAGTATTATCTCGCTGCACATATTAAAATAGTTCACAACAACGATTCTTGGTCCCGTTGCGAATACTGTGACAAACAGTTTAAATCTAAAAGAAATATTCGAAGACATATTGAGTACACTCATCTAGGCATGCAGAGATACAAGTGCATCGAATGCGAGACCTTGTTCAAAGAAAAACGGAGTTTAAGAAAACATGTGCGCACTAAACATCCTGATTCGGCATCATTTCCTCAGTGTCACATATGTTACAAACGGTTCGAATCGGCCAAATCTTGTAAAATCCATCTGAAACTTGTGCATTCTTTTAACATGAACACCTACCCGTGTCACTTATGTTCCGTATCGTTTAGTTCGAACGAAGCTTTGAGTATACACTTACAGACAAAGCATCTAGCCGAAGACCAGATTTATAAATGCGAAGAGTGTAATTTAGTGTTCAAAGGGCAGGAAAAATTTGACGCACATAACGATGTCTGCCACGTCAATTTAGTCCCGGCGATCAAGCAGAAAGTGTTACCACGATGCATTCTCTGCATGAAAGACTTTAGTACCCGCAAAACTTTGAAACGACACATTAAAAAGTTCCACGAGGAATTCGATGTGGATGAATTAGCAACTTTCGGTTCTAGACGGAGAACTTTCACAGTGGACTGCGAGGACTGTATCAAGAACTTTAGCGACGATTTTCATTTGAACATATACAACAAAATCAAGCATTTAAGAGACACTGAAGTGTTTAAGTGCCAAACTTGCTTCGAATCCTACAATTCGTTAGAATTCGCGATTCAAAGGTATAAGGTCTTAAACGCCGATGCTTGTAAAAGCAAAATGATCCTAAGTGAGCTTTGTACCGCTGAAATGAGTGAGGAGGAGAATGATTTTTCTAGCTTCGGAGCTTTGCATGACATGTTGCCTGAAAGTACGACTGGGGATCTCAATATAAAGTGTGAACCCCTTGATGATGTGTTTGTGAGCGATATCAAGATGGAACCAGAGTCACCGTAA
Protein Sequence
MYHSQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCSICGQNFGSPAGLLQHLSRGHNNYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGYEIKCRLCEKTFTTERNLKRHMNQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNVTEKDAIKCHLCEKVYTNNRNLKRHIEMFHGEKGEFRCDICPKVYTSNQSLRRHARTRHSTDNQEHLTCNFCMKVIIGRENFESHVQFHHQDTELDVKTAEFVCEYCDKGFDEEPCLRQHVKTEHSFKTFYKYCKKSLLKQYGMDTRTIYNCEFCHYYFLNVYELKDHMRVNHDTEYSLSTCNVCFTKFYSTVTMSAHREICLPPENVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNMDDEAVSFKCDHCDRVYYSDRSLKHHIKLKHTSDEQVECEICGKICSNKYYLAAHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPDSASFPQCHICYKRFESAKSCKIHLKLVHSFNMNTYPCHLCSVSFSSNEALSIHLQTKHLAEDQIYKCEECNLVFKGQEKFDAHNDVCHVNLVPAIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEEFDVDELATFGSRRRTFTVDCEDCIKNFSDDFHLNIYNKIKHLRDTEVFKCQTCFESYNSLEFAIQRYKVLNADACKSKMILSELCTAEMSEEENDFSSFGALHDMLPESTTGDLNIKCEPLDDVFVSDIKMEPESP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00447464;
90% Identity
iTF_01230865;
80% Identity
iTF_01118586;