Oale017622.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- -
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000189.1:168732-171080[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.7e-07 4.3e-05 24.3 1.4 1 23 8 31 8 31 0.95 2 19 0.00055 0.05 14.6 0.3 2 23 37 59 36 59 0.95 3 19 2.8e-05 0.0025 18.7 0.3 2 23 68 90 68 90 0.97 4 19 2.9e-06 0.00026 21.8 2.0 2 23 99 121 98 121 0.95 5 19 0.00017 0.015 16.3 0.5 2 23 129 151 129 151 0.96 6 19 2.4e-06 0.00022 22.1 1.1 2 23 160 182 159 182 0.95 7 19 2.2e-05 0.002 19.1 1.5 1 23 188 211 188 211 0.98 8 19 3.3e-06 0.0003 21.7 0.8 1 23 262 285 262 285 0.96 9 19 0.0028 0.25 12.4 1.4 2 23 313 335 312 335 0.96 10 19 0.45 41 5.5 0.3 3 21 344 362 342 363 0.93 11 19 0.0062 0.56 11.3 0.8 2 23 372 394 372 394 0.95 12 19 0.003 0.27 12.3 6.1 1 23 419 442 419 442 0.97 13 19 0.00013 0.012 16.6 0.5 2 23 449 471 448 471 0.96 14 19 2.7e-05 0.0024 18.8 2.2 2 23 478 500 477 500 0.94 15 19 0.014 1.3 10.2 1.4 1 23 506 529 506 529 0.96 16 19 0.12 11 7.3 6.1 2 23 537 559 537 559 0.94 17 19 0.013 1.1 10.4 0.5 1 23 566 589 566 589 0.96 18 19 0.0087 0.79 10.9 2.1 1 23 596 619 596 619 0.95 19 19 0.0016 0.15 13.2 2.2 2 23 633 655 633 655 0.96
Sequence Information
- Coding Sequence
- ATGTTTCAAGGTCAAACGGTGTTCGTGTGTGATTACTGCAACCGCAACTTCACGAGGAAGTACAACCTTCAGGCCCACATAGAGAACTACCACCTGAACACGTCGTGCTACTGCGAAATATGCGACCAGAGGTTCGGCAGCCCGGCCGGCCTGCAGCTGCACCTCAGCCGCGGCCACAACAGGCACGGGCAGCCCTTGCCCGAGTGCGACCTGTGCGGCAGGATATTCACGAGGAAGCAGAACGTCTCCTCGCATATGATCACCGTGCACCTGCAAGGCGCTAGGCCCGATATCAGGTGTAAAATATGCGAGAAGACGTTCACCACGGAGAGGAACCTCAAGAGGCACACGAACCAGCTCCACAATCCGCACGCGGTGTACCCAACCTGCGATGAGTGCAAAAGGATGTTCAAGGGGAAACAGTCGCTCATCGCCCACATCCTGTCCACCCACCAGCTGACGGAGAAGGGTATGATCAAATGCAAACTCTGCGACAAAGTCTACACGAACAACAGGAACTTGAAACGTCACGTGGAGATGTACCACGGGGAGAGGGGCCAGTACAGGTGCGGCTCCTGCCCCAAGGTGTACACTTCGAACCAGAGCCTGAGGAGGCACGAGAAAACCCGCCACAACTCGAAGAGTCCACCGCGGCTCAATTGCCAAAACTGTGACGAAACAGTGTTTGGCAATGATAGAATAAACCATCACATCGCCAACTGCCGCAGTCAGGGGAACCACGGTCCAGTAGACTCCTTGCCCAACCTGAAGTTAACACCAGTGTTCTCTTGCAGCAAATGTGACAAAACCTTCAGCCAGGAGCCACTACTGCGCCAGCATATTAAACTGGATCACACCTTCCAAGATTTCTACGAGTACTGCAGGAGATCACTACTTAAGATTATGAGGGGCTCACAGAGCAGGAGGAACTTCATCAGCTGCGAGTTCTGCAGGGACTCATTTTCCAGTGCATGCGAACTCAAGGATCACATGCGGGTGAGTCACGACAGAGATTACAACTTGTCCAACTGCAACGTCTGCTACAACAAGTTCTACAGCAGAGAGGCGATGACGGAGCACAGGAAGATCTGCCTACCCCCGCCGGATGTGAACTCCTGCCCCTATTGCAGCAAGCTGTTCACCGACATCTCCAGCCTGCAGTTCCACACGAGGATATTCCATCCGCAGACGCAAGGCGGCGGTTCCGTGCTCTCCTGCACCAACATCGAGGACCCATCCACGGAGCTCGGCTGCTACAAATGTGGCCACTGCAGCCGCGTGTACTACAGCGACAGGTCCTTGAAGCACCACATGAAGCTGAAACACTCCGCCGAGCAGACGGTCGAGTGCCAGTTCTGCGGCAAGGTCTGCGGCAACAAGTACTACCTCGCCTCCCACATCAAGATCGTGCACACGGCAACCACCTGGTCCAAGTGCGACTACTGCGACAAACAGTTCAAGTCCAAGAGGAACATCCGGAGACACATCGAGTACACCCACCTGGGGATGCAGCGCTACAGGTGCATAGAGTGCGAGACGCTCTTCAAGGAGAAACGGAGCCTCCGGAAGCACGTCAGGATCAAACATCCGGACTCGAACCTGTTCCCCGAGTGCCACATCTGCCACAAGCGCTTCGAGTCCGCCAAGTCCTGCAAGATACACCTCAAACTCGTCCACTCCTTCAACATGAACACCCATCCCTGCGATCTCTGCTCCGACTCCTTCGATTCCATGGACGCCCTCAACACTCACCTCCAGACCAACCACCTGGCCGAAGACGAAATATACAAGTGCGAGGAGTGCAACCTGGTCTTCAAGGGTCACGAGAAGTTCGACCGTCACAACGAAACGATGCATTTCAACCTGGTGTCGAACACGAGGCACAAGACGCTGCCGCGCTGCGTGGTCTGCATCAAGGACTTCAGTTCACGGAAGACACTGAAGCGGCACATCAGGAAGTTCCACGAGGAGTTCGACGTGGAGGAGCTGGCTAACTACGGCTGGCTAGTCAGGGCGACAAGTGTGGAATGCGCCGAATGCATAAAGACCTTCAACGATGACGTGAAGCACAGCACCTTCCAGGAGCTGAAGCAGACGAGAGAGACCATAATATTCACGTGCACCGCTTGCTTCACCTCCTACAACGCTCTGGAGTACGCAGTTCTAAGGTACAAGCTGGTGGACGCTTGCAGGAGTAAGATGATGCTGAGCGAGTTCTGCACGGCGGTGATGAGCGACTGCGAACTGGATGCGGCGGACGGCATGGACCCGGAGACCACCGCCATCAGCATCAAGATCGAACCGTCGGATCTTCTGTATGACATAAAGACTGAACCAATGTCTCCGTAA
- Protein Sequence
- MFQGQTVFVCDYCNRNFTRKYNLQAHIENYHLNTSCYCEICDQRFGSPAGLQLHLSRGHNRHGQPLPECDLCGRIFTRKQNVSSHMITVHLQGARPDIRCKICEKTFTTERNLKRHTNQLHNPHAVYPTCDECKRMFKGKQSLIAHILSTHQLTEKGMIKCKLCDKVYTNNRNLKRHVEMYHGERGQYRCGSCPKVYTSNQSLRRHEKTRHNSKSPPRLNCQNCDETVFGNDRINHHIANCRSQGNHGPVDSLPNLKLTPVFSCSKCDKTFSQEPLLRQHIKLDHTFQDFYEYCRRSLLKIMRGSQSRRNFISCEFCRDSFSSACELKDHMRVSHDRDYNLSNCNVCYNKFYSREAMTEHRKICLPPPDVNSCPYCSKLFTDISSLQFHTRIFHPQTQGGGSVLSCTNIEDPSTELGCYKCGHCSRVYYSDRSLKHHMKLKHSAEQTVECQFCGKVCGNKYYLASHIKIVHTATTWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYRCIECETLFKEKRSLRKHVRIKHPDSNLFPECHICHKRFESAKSCKIHLKLVHSFNMNTHPCDLCSDSFDSMDALNTHLQTNHLAEDEIYKCEECNLVFKGHEKFDRHNETMHFNLVSNTRHKTLPRCVVCIKDFSSRKTLKRHIRKFHEEFDVEELANYGWLVRATSVECAECIKTFNDDVKHSTFQELKQTRETIIFTCTACFTSYNALEYAVLRYKLVDACRSKMMLSEFCTAVMSDCELDAADGMDPETTAISIKIEPSDLLYDIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249862; iTF_01130187; iTF_00180663; iTF_01495929; iTF_01496738; iTF_01494476;
- 90% Identity
- iTF_01495929;
- 80% Identity
- -