Bhed023114.1
Basic Information
- Insect
- Byasa hedistus
- Gene Symbol
- -
- Assembly
- GCA_029286795.1
- Location
- JAGSMW010000034.1:2566159-2568501[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.6e-07 8e-05 23.6 4.0 1 23 8 31 8 31 0.95 2 20 0.00058 0.062 14.6 0.2 2 23 37 59 36 59 0.94 3 20 1e-05 0.0011 20.1 0.3 2 23 68 90 68 90 0.97 4 20 2.8e-06 0.0003 21.9 2.3 2 23 99 121 98 121 0.95 5 20 7e-05 0.0074 17.5 0.5 2 23 129 151 129 151 0.96 6 20 1.8e-06 0.00019 22.4 1.3 2 23 160 182 159 182 0.95 7 20 5.5e-06 0.00058 20.9 1.6 1 23 188 211 188 211 0.98 8 20 6.7e-06 0.00071 20.7 1.3 1 23 260 283 260 283 0.96 9 20 0.00015 0.015 16.5 2.4 2 23 311 333 310 333 0.95 10 20 1.5 1.6e+02 3.8 0.2 3 21 342 360 341 361 0.93 11 20 0.0077 0.81 11.0 0.3 3 23 371 392 370 392 0.95 12 20 0.022 2.3 9.6 5.4 1 23 416 439 416 439 0.96 13 20 2.5e-05 0.0027 18.9 1.8 2 23 446 468 446 468 0.96 14 20 5.9e-05 0.0063 17.7 4.0 2 23 475 497 474 497 0.94 15 20 0.0004 0.042 15.1 1.3 1 23 503 526 503 526 0.98 16 20 0.14 14 7.1 4.3 2 23 534 556 534 556 0.94 17 20 0.015 1.6 10.1 0.2 1 23 563 586 563 586 0.96 18 20 0.047 5 8.6 1.6 1 23 593 616 593 616 0.88 19 20 0.0012 0.13 13.6 2.1 2 23 630 652 630 652 0.96 20 20 6.3 6.7e+02 1.9 0.1 1 10 702 711 702 715 0.90
Sequence Information
- Coding Sequence
- ATGTTTCAAAATCAAACGGACTACGTGTGTGACTACTGCCATCGCACGTTCACGAGGAAGTACAACCTTCAGACGCACATCGAGAATTACCATTTGAACAGGTCGTGTTACTGTGGAATATGCGACCAGAGGTTCGGGAGCCCGGCCGGCCTGCAGCAGCACCTCGCCCGCGGCCACAACAGGCACGGTCAGCCGTTCCCCGAGTGCGACCTGTGCGGCAGGATATTCACGAGGAAACAGAACGTCACCTCGCACATGATCACTGTGCACCTGCAAGGCGCTCGGCCCGAGATCAGGTGTAAAATATGCGAGAAGACCTTCACGACGGAGAGGAATCTCAAGAGGCACACGAAGCAGCTCCACAACCCGCACGCGGTTTACCCAACGTGCGATGAATGCAAGAAGATGTTCAAAGGGAAACAGTCTCTCATCGCTCACATCCTGTCCACTCACCAGCTGACAGAGAAGGGCATGATTAAATGCAAACTCTGCGACAAAGTTTACACGAACAAAAGGAACTTGAAGCGTCACGTGGAGATGTACCACGGGCAGAGGGGCCAGTACAGGTGTGACTCCTGCCCCAAGGTCTACACCTCGAACCAGAGCTTAAGGAGGCACGAGAGGACTCGCCACAACGTGAACAGTCCGCCGCAGCACCACTGCCCCAACTGTTACGCTACGATATTCGGCACTGATAAAATAAACCATCACATCGCCTACTGCCATAGACAAGAGAACCATAGAGCAACGGAATCTCCGCCCGATCTGAAACCTGAGTTCGTCTGCGGCAAATGTGATAAATGCTTCAGCCAGGAGCCGTTGCTCCGACAGCACATAAAACTTGATCACACCTTCCAAGACTTCTACGAGTACTGCAGGAGATCACTGTTGAGGATCGTGAAAGAATCGCAGCTGAGGAGGAGCTTCATCAGCTGCGAGTTCTGCCGGGAGACCTTCACCACTTCGTTCGAACTGAAAGAGCACATGCGCGCGTGCCACGACAGGGAGTACAGCGTGTCCGCCTGCAACGTCTGCTTCAACAAGTTCTACAGCAGGGAGGCGATGAGCGAGCACAGGAAGATCTGCCAACCGCCACCCGACGCTAACCCCTGCCCGTACTGCAGCAAGCTGTTCACCGACATCTCCAGCCTGGAGTTCCACACGAGGATATTCCACCCGCAGACGctggcgggcggcgcgggcgcgcaGTGCGCCGGCGGCGACCCGTCCGCCGAGCTCGGCTGCTACAAGTGCGCGCACTGCAGCCGCGTCTACTACAGCGACCGCTCGCTGAAGCACCACGTGAAGCTGAAGCACTCCGCGGAGCAGGCCGCCGAGTGCGAGCACTGCGGCAAGGTCTGCAGCAACAAGTACTACCTCGCCTCCCACGTGAAGATCGTGCACACCGCCGGCGCCTGGTCCAAGTGCGACTACTGCGACAAACACTTCAAGTCCAAGAGGAACATCCGGCGGCACATCGAGTACACGCACCTCGGCATGCAGCGCTACAGGTGCGCCGAGTGCGAGACCCTCTTCAAGGAGAAGCGCAGCCTCCGCAAGCACGTCAGGATCAAGCACCCCCATTCCGAGCTGTTTCCGGAGTGCCACATCTGCCGCAAGCGCTTCGAGTCCGCCAAGTCCTGCAAGATACACCTCAAGCTCGTCCACTCCTTCAACATGAACACCCACCCGTGCGACCTCTGCTCCGACTCCTTCGACTCCGTGGACGCGCTCACCGTCCACCTGCAGACCAACCATCTGGCCGAGGACGAGATCTACAAGTGCGAGGAGTGCAACCTGGTGTTCAAGGGCCACGAGAAGTTCGACAGCCACAACGGGACGATGCACTTCAGCCTCGCGTCGAACAGCAGGCACAAGGCGCTGCCGCGCTGCGCGGTCTGCATCAAGGACTTCAGCTCGCGGAAGACTCTAAAACGCCACATCAGGAAGTTCCACGAGGAGTTCGACGTCGAGGAGCTCGCGAACTACGGCTGGCTGGTGAGGGCCACCAGCGTTGAGTGCGCCGAGTGCATAAAGACCTTCAACGACGACGCGAAGTACAGCGCGTACCTGGAGCTGAAGCAGACGCGGGAGACGGTCGTGTTCACCTGCGAGAACTGCTCCACGTCGTACAACGCGCTGGAGTACGCGGTGCTGAGGTACAAGCTGGTGGACGCGTGCAGGAGCAAGATGATGCTGAGCGAGTTCTGCACGGCGGTGATGAGCGACTGCGAGACGTTCGAGCACCAGGACCCTCAGGATGGGGATACTTCAGCTATCGCCATCAAAATGGAGCCGGCGGAGCTGCTGTACGAGATTAAGACTGAACCGATGTCTCCTTAA
- Protein Sequence
- MFQNQTDYVCDYCHRTFTRKYNLQTHIENYHLNRSCYCGICDQRFGSPAGLQQHLARGHNRHGQPFPECDLCGRIFTRKQNVTSHMITVHLQGARPEIRCKICEKTFTTERNLKRHTKQLHNPHAVYPTCDECKKMFKGKQSLIAHILSTHQLTEKGMIKCKLCDKVYTNKRNLKRHVEMYHGQRGQYRCDSCPKVYTSNQSLRRHERTRHNVNSPPQHHCPNCYATIFGTDKINHHIAYCHRQENHRATESPPDLKPEFVCGKCDKCFSQEPLLRQHIKLDHTFQDFYEYCRRSLLRIVKESQLRRSFISCEFCRETFTTSFELKEHMRACHDREYSVSACNVCFNKFYSREAMSEHRKICQPPPDANPCPYCSKLFTDISSLEFHTRIFHPQTLAGGAGAQCAGGDPSAELGCYKCAHCSRVYYSDRSLKHHVKLKHSAEQAAECEHCGKVCSNKYYLASHVKIVHTAGAWSKCDYCDKHFKSKRNIRRHIEYTHLGMQRYRCAECETLFKEKRSLRKHVRIKHPHSELFPECHICRKRFESAKSCKIHLKLVHSFNMNTHPCDLCSDSFDSVDALTVHLQTNHLAEDEIYKCEECNLVFKGHEKFDSHNGTMHFSLASNSRHKALPRCAVCIKDFSSRKTLKRHIRKFHEEFDVEELANYGWLVRATSVECAECIKTFNDDAKYSAYLELKQTRETVVFTCENCSTSYNALEYAVLRYKLVDACRSKMMLSEFCTAVMSDCETFEHQDPQDGDTSAIAIKMEPAELLYEIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115853;
- 90% Identity
- iTF_00180663;
- 80% Identity
- -