Pkot014140.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- -
- Assembly
- GCA_018246255.1
- Location
- DWLS01010272.1:1788-4136[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.6e-07 6e-05 24.0 1.7 1 23 8 31 8 31 0.95 2 19 0.0012 0.11 13.7 0.2 2 23 37 59 36 59 0.94 3 19 2.7e-05 0.0024 18.9 0.2 2 23 68 90 68 90 0.97 4 19 7.3e-06 0.00066 20.7 3.0 2 23 99 121 98 121 0.95 5 19 0.0005 0.046 14.9 1.2 2 23 129 151 129 151 0.94 6 19 1.1e-05 0.00099 20.2 1.9 2 23 160 182 159 182 0.93 7 19 2.1e-05 0.0019 19.3 1.5 1 23 188 211 188 211 0.98 8 19 3.5e-05 0.0031 18.6 0.4 1 23 262 285 262 285 0.96 9 19 0.0013 0.11 13.7 0.6 3 23 314 335 312 335 0.96 10 19 0.11 10 7.5 0.8 2 21 343 362 342 363 0.93 11 19 0.0097 0.88 10.9 0.6 2 23 372 394 372 394 0.95 12 19 0.0034 0.31 12.3 6.1 1 23 418 441 418 441 0.97 13 19 0.00021 0.019 16.1 0.7 2 23 448 470 448 470 0.96 14 19 3e-05 0.0028 18.8 2.2 2 23 477 499 476 499 0.94 15 19 0.016 1.4 10.2 1.4 1 23 505 528 505 528 0.96 16 19 0.13 12 7.3 6.1 2 23 536 558 536 558 0.94 17 19 0.41 37 5.8 0.9 1 23 565 588 565 588 0.96 18 19 0.0056 0.5 11.6 1.2 1 23 595 618 595 618 0.95 19 19 0.0032 0.29 12.4 2.1 2 23 632 654 632 654 0.96
Sequence Information
- Coding Sequence
- ATGTTTCAAAATCAAACGGATTATGTGTGTGATTACTGCAAACGGGCCTTCACCAGGAAGTACAACCTGCAGACCCACATTGAGAATTACCACTTGAACACAACGTGTTACTGCGAAATATGCGAGCAGAGGTTCGGGAGCCCGGCCGGCCTGCAGCAGCACCTCGCCCGCGGCCACAACAGGGACGGGCAGCCGTACCCTGAGTGCGACCTGTGCGGCAGGATATTCACGAGGAAGCAGAACGTCGCCTCGCACATGATCACCGTGCACCTGCAGGGAGCGCGGCCCGAAATCAGGTGTAAACTATGCGAGAAGACCTTCACAACTGAGAGGAATCTCAAGAGGCACATAAACCACATCCACAACCCGCACACGGTGTACCCAACCTGCAATGAGTGCAAGAGGATTTTCAAAGGTAAACATTCACTCATCGCTCACATTGTGTCCACTCACCAGCCGGCGGAGAAGGGCATGATCAAATGCAAACTCTGCGACAAGAAGTACACCAACAAGAGGAACTTGAAACGGCACGTGGGGATGTACCACGGGCAGAGGGGACAGTACAGCTGCGACTCCTGCCCCAAGGTGTACACTTCGAATCAGAGCTTGAAGAGGCACGAGAAGACTCGCCACAATTTGCAGAGTCCACCGCAGCTGAACTGCCAGAACTGCTATGCAACAGTCTTCGGCACGGACAGGATAAACCGTCACATCGCCCAATGTCATAGAGAAGGGAACCAGAGAGCTCAGGAGAACACACCTGATCCGAAGTTGGAACCCGAATTTGTATGCAGCAAATGTAATAAGGGCTTCAACCAGGAACCTTTACTCCGTCAGCACATAAAGCTCGATCATTCCTTCCAAGACTTCTACGAGTACTGCAGGAGGTCGCTCTTGAGGATCATGAAAGGGTCGCAGCACAGGAAGAACTTCGTCAACTGCGAATACTGCGAAGACACCTTCGTCAGCGCGTGCGAGCTGAAGGATCACATGCGGGTGAACCACGACAGGAGTTACAGCCTGTCCACCTGCAACGTCTGCTTCACCAAGTTCTACAGCAAGGAGACCATGTCGGAGCACAGGAAGATCTGCATACCGCCGCCGGACGCAAACTCGTGCCCGTACTGCAGCAAGCTGTTCACGGACATCTCCAGCCTGGAGTTTCACACGAGGATATTCCACCCGCAGGCCCAGGTGGGGTCCGTGGAGACCTGCGGCGACGGCGGCCGGCCGCCCGCCGAGCTGGGCTGCTACAAGTGCGGCCACTGCAGCCGCGTCTACTACAGCGACAGGTCGCTGAAGCACCACATGAAGCTGAAGCACTCCTCGGAGCAGACCGCCGAGTGCCAGTTCTGCGGGAAGGTCTGCGGGAACAAGTACTACCTGGCCTCCCACATCAAGATCGTCCACACCGCCGCGGCCTGGTCCAAGTGCGACTACTGCGACAAGCAGTTCAAGTCCAAGAGGAACATCAGGAGGCACATCGAGTACACCCACCTGGGCATGCAGCGCTACAGGTGCATCGAGTGCGAGACGCTCTTCAAGGAGAAGCGCAGCCTCCGGAAGCACGTTAGGATCAAGCACCCTGACTCGGACCTGTTCCCCGAGTGCCACATCTGCCACAAGCGCTTCGAGTCCGCCAAGTCCTGCAAGATACACCTGAAGCTCGTCCACTCCTTCAACATGAACACCCACCCCTGCGACCTCTGCTCCGACTCCTTCGACTCCATGGACGCTCTCAACTTCCACCAGCGCACCAACCATTCCGCCGAGGACGAGATCTACAAATGCGAGGAGTGCAACCTGGTGTTCAAAGGTCACGAGATGTTCGACCGCCACAACGAGACCGTTCACCTCAACCTGGTCTCCAACGGCAGGCACAAAGCGCTGCCGCGCTGCGCGGTCTGCATAAAGGACTTCAGCTCGAGGAAAACGCTAAAGCGGCACATCAAGAAGTTCCACGAGGAGTTCGACGTCGAGGAGCTGGCGAACTACGGCTGGTTGGTGAGGGCCACCAGCGTGGAGTGCGCGGAGTGCATAAAGACATTCAACGACGACGTTAAGTTCAGCCACTTCCAGGACACGAACCACTCGAGGGAGAGCGTCATATTCACGTGCGAGTCCTGCCTGACCCCGTACAACGCCCTGGAGTACGCGGTGCTCAGGTACAAGCTGGTGGACGCGAGCAGGAGCAAGATGATGCTGAGCGAGTTCTGCACGGCGGTGATGAGCGACTGCGAGCAGTTCGAGGACCCACGCGCCGTCGAATCAGAAGCTACCACAATCACCATCAAGATCGAACCTGCTGACCTGCTATATGAAATCAAGACTGAACCAATGTCTCCGTAA
- Protein Sequence
- MFQNQTDYVCDYCKRAFTRKYNLQTHIENYHLNTTCYCEICEQRFGSPAGLQQHLARGHNRDGQPYPECDLCGRIFTRKQNVASHMITVHLQGARPEIRCKLCEKTFTTERNLKRHINHIHNPHTVYPTCNECKRIFKGKHSLIAHIVSTHQPAEKGMIKCKLCDKKYTNKRNLKRHVGMYHGQRGQYSCDSCPKVYTSNQSLKRHEKTRHNLQSPPQLNCQNCYATVFGTDRINRHIAQCHREGNQRAQENTPDPKLEPEFVCSKCNKGFNQEPLLRQHIKLDHSFQDFYEYCRRSLLRIMKGSQHRKNFVNCEYCEDTFVSACELKDHMRVNHDRSYSLSTCNVCFTKFYSKETMSEHRKICIPPPDANSCPYCSKLFTDISSLEFHTRIFHPQAQVGSVETCGDGGRPPAELGCYKCGHCSRVYYSDRSLKHHMKLKHSSEQTAECQFCGKVCGNKYYLASHIKIVHTAAAWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYRCIECETLFKEKRSLRKHVRIKHPDSDLFPECHICHKRFESAKSCKIHLKLVHSFNMNTHPCDLCSDSFDSMDALNFHQRTNHSAEDEIYKCEECNLVFKGHEMFDRHNETVHLNLVSNGRHKALPRCAVCIKDFSSRKTLKRHIKKFHEEFDVEELANYGWLVRATSVECAECIKTFNDDVKFSHFQDTNHSRESVIFTCESCLTPYNALEYAVLRYKLVDASRSKMMLSEFCTAVMSDCEQFEDPRAVESEATTITIKIEPADLLYEIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115853;
- 90% Identity
- -
- 80% Identity
- -