Ofri001122.1
Basic Information
- Insect
- Ornithomya fringillina
- Gene Symbol
- -
- Assembly
- GCA_963978525.1
- Location
- OZ021690.1:11469576-11473280[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.015 1.1 9.9 0.8 2 23 151 173 150 173 0.94 2 15 0.0046 0.34 11.6 0.8 2 23 184 205 184 205 0.98 3 15 8.6e-05 0.0064 17.0 0.7 2 23 228 250 227 250 0.95 4 15 4.1e-05 0.003 18.0 0.6 1 23 270 292 270 292 0.98 5 15 7.8e-05 0.0058 17.1 1.4 1 23 298 320 298 320 0.97 6 15 0.0037 0.27 11.8 0.4 1 23 325 347 325 347 0.96 7 15 2.8e-06 0.00021 21.7 1.2 1 23 353 375 353 375 0.97 8 15 0.43 32 5.3 0.5 3 23 694 715 692 715 0.87 9 15 0.0041 0.3 11.7 1.0 2 23 725 746 724 746 0.97 10 15 8.8e-05 0.0065 17.0 0.3 2 23 756 778 755 778 0.95 11 15 0.001 0.074 13.6 0.2 1 23 783 805 783 805 0.98 12 15 2.9e-05 0.0021 18.5 3.2 1 23 811 833 811 833 0.98 13 15 0.00065 0.048 14.2 0.6 1 23 838 860 838 860 0.97 14 15 0.028 2 9.1 1.7 1 23 866 888 866 888 0.95 15 15 0.0034 0.25 12.0 3.0 1 23 894 917 894 917 0.96
Sequence Information
- Coding Sequence
- ATGAAAAGCACTACGAGCGAATGGTATTCGTGGTGTCGTTTATGTGGAGATAAGGATTCTCACAAACATATGGAGCTATTTCTCCCGGGCGAACTTGAAGCTGTAATAGGAGATGGGAACATGTACATAGCCCAAGTTATAGAAAAGCATTTCGCTTTAAAGATATCAGTTGATGACGTTTTGCCCAAGATGATATGCCACCAATGTTATAAATTTCTATGCATTGTGATGCAGATTAACGACAGCATTCTCAAGGTTCAAGAAATGTTCCAAAAACTATATGAGAGCAAGCTGGAAATGGAGAAGCAATCAACTAATACTGAAATAAACGTTGGAGAGAGTGCAAGTCTTGGTGGTAATTTAGCTGCGGAAGATGTTTCACGTGCAGAAACACAAGTAAGCATTGATAGACTGCAACGGCGAAACAAAGATCACTCCGAAATGGATATAGTTTGTAAAGATTGTGGTGAGAGGTTCCAATATTTTAAACCGTATCGCCagcatttaaaagaaaaacatatgaATCGCACAGATCACGGTTTGGGGAGGCAATGCTTGCTATGCGGGGAGATATCGAATTCAAATACCAGCTTCAGGAAACATTTGTTAACACATGAAAGTTCGAGCCAAACATATGCAAATGATTTACCCGATAATAATGTACCAACTGAGCAACTACTGCCCTGCCCAGAATGCAAAGAACAATTTCCAAATCAGAGGAAACTGCAACAGCACCAGAAAAATTTCCACAAGAAGCCGAATACCATGGAAAAGCCGAAAGTAAAGAAATCTGCTGAACCACAGAAATTTATCTGTGAAGAGTGTGGAGCTTGTTTGCGCAATAGCGTCAATCTGAAAATTCATTTGCAACGTCACAGTGACAATGCGCCTTTCGAGTGTGAAGTGTGTAAAAAACGATTTAAAAATCCTAGAAGACTTAAGATTCATAGCGAAACGCACACTTCTCACAAACACATTTGCCCCATTTGCGGTCTTCAATTAAATGCCAAAAATACCCTAAGACGCCACAGACTGGTGCACAGTAATGAGAGGAAACACAAATGTGATTATTGTGGACGAGGTTTTAAATCGTCGGACGGTTTAAAATCACATTTAATGGCTCATGCCGGCATCAAGCCGTATGCTTGCAATTTTTGTGATCGTGCTTTCACTTGTGCAGTAAATTGTCGGCAACATAAAAAGAATAAGCATGCCAAAGAATTGGATGCTTTAGAGGCAAACGGTGGGGCCGaacaaattgtacaaaaaatccCCTCTTTGGAAACGTTAAAAGCACTCATGAAAGGTGCTAGCGGAGGATTAAATCCTGTGGCTAAATATAAACGACCGCAATCTCATGACTGTTTCCTAATAATGACATCTGCAGAAGATTCGGGTACAAAACTGTCTATTGACCTCAACAAATGGCAATTTTGGTGTCGCTTGTGCGGAAGAATCGATTCACAGCATCACATAGACATATTTCGAGATGTACAATATGTGGCATCTAGTGAAGAAGAAATATCACTTATTCAAGCAATTGAGAAATTCCTAGCCGTACAGATATCCCAAAAAGATAATTTCTCCAAAAGGGTGTGTCCTTATTGTAttgaacaaattaaaaatctgATTGGTTACCATGAACGCGTCCATAAGGTGCAACAAATGTTTGAAATGATTTGCAAAAGTGCAATTGAAACCCAGAACCTTGAACGATTGCGTTCTAAGTTTGGTATTAGTGAAGAGGAAAGCACCAGCACTATATCTTGGAAACCATTATTGAAGGTAGAAGAAAACAAACCAAAAGACATGTCAGCAAATGATGAGAAACTGAAAGTTGAAGACGTGCCAGCTGAGGACAGCGGCCATCTTGAATATGATAAGGAATCCTTAAGCTCCCACACCCCGACCAATGAAGATCCCCTAAGTAGCATAAGCGAGAGTCAATCATGCGAGATGCCAGCATCCAAGAATCGcaagaagaaaactaaaacaaacatGCAGCAGATAAGATGCAAATTACGCAATAACAAGGAAAGAGTTGATTATGGAGCGGAATGTgttaaattgaatattatttgTAGTAAATGTCAGCAGAAGTTTGACTCTTTCGAGCCGTATCGTAGTCATTTGGTGGAGAAACACAACAAGTTGgagaaaacgaaaaaatggGAATGTCCTACATGCGCGAAAATCCTAACATCCAGTTGCCGTTTAGAGCGCCACCTTAGATCGCATATACCTCGCAACGAACCGGACGTATTGCCATGCCCAGATTGTGGTAAAAAATTTCTCAACAATTCACGTCTACGCGcccatatacaatataagcaTAATTTGGAGCGTTTCGTATGCGAAGAATGCGGTGCCTTTATAACCACCAAAGCCAATCTAAAGTTTCATATGCTGACGCACCGGGATTATGCGCCCTTTGAGTGTGAAGTGTGTAAAAAACGATTCAAGCACGCTAGACGTCTAAAGATTCACATGGATACGCACGACAATCGAAAACATGTTTGCAATATATGCGGCTTACAGTTGAACACTCGCATCACTCTGAGAAGTCACATGTCCGTACACAACGACGTAATGAAGTACAAGTGTGAAttctgtgggcgtggtttcAAATTGatgaaaacattaaaatttcacttgATATCGCATACCGGCCTCAAACCGTATACATGTGACTTTTGCGATCGGGCCTTTACCAACAATGCCAACTGTCGCCTGCACAAAATGAAGATACATCCTGACGAATGGGCGGCATTAGAAAAGTCAGGTGATCCGAAGAAAATGCATCGCCTGCCCAATATGGAAACGTTAAAAGCCTTGTAA
- Protein Sequence
- MKSTTSEWYSWCRLCGDKDSHKHMELFLPGELEAVIGDGNMYIAQVIEKHFALKISVDDVLPKMICHQCYKFLCIVMQINDSILKVQEMFQKLYESKLEMEKQSTNTEINVGESASLGGNLAAEDVSRAETQVSIDRLQRRNKDHSEMDIVCKDCGERFQYFKPYRQHLKEKHMNRTDHGLGRQCLLCGEISNSNTSFRKHLLTHESSSQTYANDLPDNNVPTEQLLPCPECKEQFPNQRKLQQHQKNFHKKPNTMEKPKVKKSAEPQKFICEECGACLRNSVNLKIHLQRHSDNAPFECEVCKKRFKNPRRLKIHSETHTSHKHICPICGLQLNAKNTLRRHRLVHSNERKHKCDYCGRGFKSSDGLKSHLMAHAGIKPYACNFCDRAFTCAVNCRQHKKNKHAKELDALEANGGAEQIVQKIPSLETLKALMKGASGGLNPVAKYKRPQSHDCFLIMTSAEDSGTKLSIDLNKWQFWCRLCGRIDSQHHIDIFRDVQYVASSEEEISLIQAIEKFLAVQISQKDNFSKRVCPYCIEQIKNLIGYHERVHKVQQMFEMICKSAIETQNLERLRSKFGISEEESTSTISWKPLLKVEENKPKDMSANDEKLKVEDVPAEDSGHLEYDKESLSSHTPTNEDPLSSISESQSCEMPASKNRKKKTKTNMQQIRCKLRNNKERVDYGAECVKLNIICSKCQQKFDSFEPYRSHLVEKHNKLEKTKKWECPTCAKILTSSCRLERHLRSHIPRNEPDVLPCPDCGKKFLNNSRLRAHIQYKHNLERFVCEECGAFITTKANLKFHMLTHRDYAPFECEVCKKRFKHARRLKIHMDTHDNRKHVCNICGLQLNTRITLRSHMSVHNDVMKYKCEFCGRGFKLMKTLKFHLISHTGLKPYTCDFCDRAFTNNANCRLHKMKIHPDEWAALEKSGDPKKMHRLPNMETLKAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114423; iTF_00384729;
- 90% Identity
- iTF_00384729;
- 80% Identity
- -