Basic Information

Insect: Ornithomya chloropus
Gene Symbol: -
Assembly: GCA_963971445.1
Location: OZ020530.1:42533703-42538940[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.056 4.7 8.3 0.6 3 23 153 174 151 174 0.91

2 16 0.016 1.3 10.0 0.4 2 23 185 206 185 206 0.98

3 16 8.1e-05 0.0067 17.2 0.8 3 23 230 251 229 251 0.98

4 16 4.4e-05 0.0037 18.0 0.6 1 23 271 293 271 293 0.98

5 16 8.5e-05 0.0071 17.1 1.4 1 23 299 321 299 321 0.97

6 16 0.004 0.33 11.9 0.4 1 23 326 348 326 348 0.96

7 16 2.3e-06 0.00019 22.1 1.2 1 23 354 376 354 376 0.97

8 16 8.4 6.9e+02 1.4 5.7 1 22 382 403 382 405 0.75

9 16 0.47 39 5.4 0.5 3 23 686 707 684 707 0.87

10 16 0.0044 0.37 11.7 1.0 2 23 717 738 716 738 0.97

11 16 9.6e-05 0.0079 17.0 0.3 2 23 748 770 747 770 0.95

12 16 0.0011 0.091 13.6 0.2 1 23 775 797 775 797 0.98

13 16 3.1e-05 0.0026 18.5 3.2 1 23 803 825 803 825 0.98

14 16 0.00071 0.059 14.2 0.6 1 23 830 852 830 852 0.97

15 16 0.03 2.5 9.1 1.7 1 23 858 880 858 880 0.95

16 16 0.0027 0.23 12.4 3.8 1 23 886 909 886 909 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.056	4.7	8.3	0.6	3	23	153	174	151	174	0.91
2	16	0.016	1.3	10.0	0.4	2	23	185	206	185	206	0.98
3	16	8.1e-05	0.0067	17.2	0.8	3	23	230	251	229	251	0.98
4	16	4.4e-05	0.0037	18.0	0.6	1	23	271	293	271	293	0.98
5	16	8.5e-05	0.0071	17.1	1.4	1	23	299	321	299	321	0.97
6	16	0.004	0.33	11.9	0.4	1	23	326	348	326	348	0.96
7	16	2.3e-06	0.00019	22.1	1.2	1	23	354	376	354	376	0.97
8	16	8.4	6.9e+02	1.4	5.7	1	22	382	403	382	405	0.75
9	16	0.47	39	5.4	0.5	3	23	686	707	684	707	0.87
10	16	0.0044	0.37	11.7	1.0	2	23	717	738	716	738	0.97
11	16	9.6e-05	0.0079	17.0	0.3	2	23	748	770	747	770	0.95
12	16	0.0011	0.091	13.6	0.2	1	23	775	797	775	797	0.98
13	16	3.1e-05	0.0026	18.5	3.2	1	23	803	825	803	825	0.98
14	16	0.00071	0.059	14.2	0.6	1	23	830	852	830	852	0.97
15	16	0.03	2.5	9.1	1.7	1	23	858	880	858	880	0.95
16	16	0.0027	0.23	12.4	3.8	1	23	886	909	886	909	0.96

Sequence Information

Coding Sequence: atgaaaagcacTGCGAGCGAATGGTATTCGTGGTGTCGTTTATGTGGAGATAAGGATTCTCGCAAACACATGGAGCTCTTTCCCCAGGGGGAGCTTAAAGCTGTAGTAGGAGATAGGAACATGTACATAGTCCAAGTTATAGAAAAGCATTTCGATTTAAAGATATCAGTTGATGATATTTTGCCCAAGATGATATGCCAGCAATGTTATAAATTGTTATGTATTGTGACGCAAATTAACGACAGCATtctcaaagttcaacaaatgTTCCAAGAACTATATGCGACCAAGCTGGAAATGGAGAAGCAATCAAGTGATAGTAATCAAGTAAAGGTTAGAGAGGATGCAAGTCTTGATGGTAATTTGGCTGCGGAAGATATTTCACGTGCAGAAACACAATTAAGTATTGATAGACTGCAACGGCGAAACAAAGAACATGTCGAAATGGATATAATTTGTAAAGATTGTGGTCAGAGGTTCCAATATTTTAAACCGTATCGCCAGCATTTAAGCGAACAACATGGCAACCGCACAGATCATGGCTTGGAGAGGCAATGCTTGCTATGCGGGGAGATATCGAATTCAAATACCAGCTTCAGGGAACATTTGTTAACACATGAGATTTCGAACCAAACATCTGCAAATGATTTACCCGATAATGATGTGCCAACTGAACAACTACTGCTCTGCCCAGAATGCAAAGAACCATTTCCAAATAAGAGGAAGCTCCAACAGCACCAGAAAAGCTTCCACAAGAAGCCGGATACCCTGGAAAAGCCGAAAGTAAAGAAACCCGCTGAACCACAGAAATTTATTTGTGAAGAATGTGGAGCTTGTTTGCGCAATAGCGTCAATCTGAAAATTCATTTGCAACGTCACAGTGACGATGCGCCTTTCGAATGTGAAGTATGTAAAAAACGATTTAAAAATCCTAGAAGACTTAAGATTCATAGCGAAACGCACACTTCTCACAAACACATTTGCCCAATTTGCGGTCTTCAATTAAATGCCAAAAATACCCTGAGACGCCACAGACTGGTGCACAGTAATGAAAGGAAACACAAATGTGATTATTGTGGACGAGGTTTTAAAACGTCGGACGGTTTAAAATCACATTTAATGGCTCATGCCGGCATCAAGCCGTACGCTTGCAATTTCTGCGATCGTTCTTTCAGTTGTGCGGTAAATTGCCGGCTACATAAAAAGAATAAGCATGCCAAGGAATTGGATGCTTTAGAGGCAAGCGGTGGGGCCGAAcaaattgtgcaaaaaatcCCCTCATTGGAAACGTTAAAAGCACTCATTAAAGGTGCTAGCGGAGGATTAAATCCTGTGGCTAAATATAAACGTAAAGAAAATATCAAAAATTCGGGTGCAAAAGTGTCAGTTGACCCCAAGAAATGGCAATTTTGGTGTCGTTTGTGCGGAAGAATCGATTCACAACATCACATAGACATATTTCGGGATGTACAATATGTGGCATCCAGTGAACAAGAAATATCACTTATTCAAGCAATTGAGAAATTCCTAGCCGTACAGATATCCCAAAAAGATAATTTCTCCAAAAAGCTGTGTCCTTATTGTATTGAACTAATCAAAAATCTGATTGGTTACCATGAACGCGTCCATAAGGTGCAACGAATGTTTGAAATGATTTGCAAAAGTGCAATTGAAACCCAGAACCTTGAACAATTGCGTTCTAAATTTGGTATTAGTGAAGAGGAAAGCATCAGCACTACATCTTGGAAGATATTATTGAAGGTAGAAGAAAGCAAACCAAAAGAAATGTTAGTAAATGATGAGAAACTGAAAGTTGAAGATGTGCCAGCTGAGGACAGTGGCCATCTTGAATATGACAAGGAATCCTTAAGCTCCCTGACCCTGACCGATGAAGATCCCCTAAGTAGCATAAGCGAGAGTCAATCATGCGAGACGCCAGCATCCAAGAATCGCaagaagaaaactaaaacaaacaTGCAGCAGATAAGATGTAAACTACTCAATAACAAGGAAAGGGTTGCTTATGGAGCGgaatgtattaaattgaatattatttgTAGTAAGTGTCAGCAAAAGTTTGACTCTTTCGAGCCGTATCGTAGTCATTTGGTGGAGAAGCACAACAAGGTggagaaaacgaaaaaatggGAATGTCCTACATGCGCGAAAATCCTAACATCCAGTTGCCGTTTAGAACGCCACCTTAGATCGCATATACCGCGTGATGAACCGGACGTATTGCCCTGCCCAGATTGTGGTAAAAAATTTCTCAACAATTCACGTCTACGCGCCCACATACAATATAAGCATAATTTGGAGCGTTTCGTATGCGAAGAATGTGGTGCCTTTATAACCACGAAAGCCAACTTAAAGTTTCATATGCTGACGCACCGAGATTATGCGCCCTTTGAGTGCGAGGTGTGTAAAAAACGATTCAAACACGCTAGACGTCTAAAGATTCACATGGATACGCACGACAATCGTAAACATGTTTGCAATATATGTGGTTTACAGTTGAACACTCGCATCACTCTAAGGAGTCACATGTCCGTACACAACGATGTAATGAAATACAAGTGTGaattttgtgggcgtggtttcaaattaatgaaaacattaaaattccACTTAATATCGCATACCGGCCTCAAACCGTATACATGTGACTTTTGCGATCGCTCCTTTACCAACAATGCCAATTGTCGTCTGCATAAAATGAAGATACATCCCGACGAATGGGCTGCATTAGAAAAGTCAGGTGATCCGAAGAAAATGCATCGCCTGCCCAATATGGAAACTTTGAAAGTGTTGTAA
Protein Sequence: MKSTASEWYSWCRLCGDKDSRKHMELFPQGELKAVVGDRNMYIVQVIEKHFDLKISVDDILPKMICQQCYKLLCIVTQINDSILKVQQMFQELYATKLEMEKQSSDSNQVKVREDASLDGNLAAEDISRAETQLSIDRLQRRNKEHVEMDIICKDCGQRFQYFKPYRQHLSEQHGNRTDHGLERQCLLCGEISNSNTSFREHLLTHEISNQTSANDLPDNDVPTEQLLLCPECKEPFPNKRKLQQHQKSFHKKPDTLEKPKVKKPAEPQKFICEECGACLRNSVNLKIHLQRHSDDAPFECEVCKKRFKNPRRLKIHSETHTSHKHICPICGLQLNAKNTLRRHRLVHSNERKHKCDYCGRGFKTSDGLKSHLMAHAGIKPYACNFCDRSFSCAVNCRLHKKNKHAKELDALEASGGAEQIVQKIPSLETLKALIKGASGGLNPVAKYKRKENIKNSGAKVSVDPKKWQFWCRLCGRIDSQHHIDIFRDVQYVASSEQEISLIQAIEKFLAVQISQKDNFSKKLCPYCIELIKNLIGYHERVHKVQRMFEMICKSAIETQNLEQLRSKFGISEEESISTTSWKILLKVEESKPKEMLVNDEKLKVEDVPAEDSGHLEYDKESLSSLTLTDEDPLSSISESQSCETPASKNRKKKTKTNMQQIRCKLLNNKERVAYGAECIKLNIICSKCQQKFDSFEPYRSHLVEKHNKVEKTKKWECPTCAKILTSSCRLERHLRSHIPRDEPDVLPCPDCGKKFLNNSRLRAHIQYKHNLERFVCEECGAFITTKANLKFHMLTHRDYAPFECEVCKKRFKHARRLKIHMDTHDNRKHVCNICGLQLNTRITLRSHMSVHNDVMKYKCEFCGRGFKLMKTLKFHLISHTGLKPYTCDFCDRSFTNNANCRLHKMKIHPDEWAALEKSGDPKKMHRLPNMETLKVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115174;
90% Identity: -
80% Identity: -