Basic Information

Insect: Crataerina pallida
Gene Symbol: -
Assembly: GCA_949710015.1
Location: OX453289.1:26410460-26416591[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.015 1 9.9 0.6 2 23 256 278 255 278 0.94

2 15 0.0075 0.51 10.9 0.8 2 23 289 310 289 310 0.98

3 15 9.8e-05 0.0066 16.8 0.7 2 23 333 355 332 355 0.95

4 15 4.6e-05 0.0031 17.8 0.6 1 23 375 397 375 397 0.98

5 15 8.8e-05 0.006 17.0 1.4 1 23 403 425 403 425 0.97

6 15 0.0042 0.28 11.7 0.4 1 23 430 452 430 452 0.96

7 15 3.2e-06 0.00022 21.5 1.2 1 23 458 480 458 480 0.97

8 15 0.49 33 5.2 0.5 3 23 804 825 802 825 0.87

9 15 0.0015 0.1 13.1 1.7 2 23 835 856 834 856 0.97

10 15 9.9e-05 0.0067 16.8 0.3 2 23 866 888 865 888 0.95

11 15 0.0011 0.077 13.5 0.2 1 23 893 915 893 915 0.98

12 15 3.2e-05 0.0022 18.3 3.2 1 23 921 943 921 943 0.98

13 15 0.00073 0.05 14.1 0.6 1 23 948 970 948 970 0.97

14 15 0.031 2.1 8.9 1.7 1 23 976 998 976 998 0.95

15 15 0.0039 0.26 11.8 3.0 1 23 1004 1027 1004 1027 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.015	1	9.9	0.6	2	23	256	278	255	278	0.94
2	15	0.0075	0.51	10.9	0.8	2	23	289	310	289	310	0.98
3	15	9.8e-05	0.0066	16.8	0.7	2	23	333	355	332	355	0.95
4	15	4.6e-05	0.0031	17.8	0.6	1	23	375	397	375	397	0.98
5	15	8.8e-05	0.006	17.0	1.4	1	23	403	425	403	425	0.97
6	15	0.0042	0.28	11.7	0.4	1	23	430	452	430	452	0.96
7	15	3.2e-06	0.00022	21.5	1.2	1	23	458	480	458	480	0.97
8	15	0.49	33	5.2	0.5	3	23	804	825	802	825	0.87
9	15	0.0015	0.1	13.1	1.7	2	23	835	856	834	856	0.97
10	15	9.9e-05	0.0067	16.8	0.3	2	23	866	888	865	888	0.95
11	15	0.0011	0.077	13.5	0.2	1	23	893	915	893	915	0.98
12	15	3.2e-05	0.0022	18.3	3.2	1	23	921	943	921	943	0.98
13	15	0.00073	0.05	14.1	0.6	1	23	948	970	948	970	0.97
14	15	0.031	2.1	8.9	1.7	1	23	976	998	976	998	0.95
15	15	0.0039	0.26	11.8	3.0	1	23	1004	1027	1004	1027	0.96

Sequence Information

Coding Sequence: ATGCTTCCTTTCACAGTGATCACGGATCACGCTAGTCTGAAATGGCTGATGAGTCTAAAGGATCTGAGTGGAAGACTTGCCCGATGGTCTCTCAAACtacaaaaatatgattttaatattgaacACCGAAAAGGTGCTCAAAATATAGTCGCAGATACATTGTCACGCTTGGTAGAAGAATTGGAATGCCTTGATGATCAAATTTTAGGTTTTGAAACTACGGAATTCGAGAGGGAagaatatacaaatttaattagaAACATTCAGTCTAGTCAGGAAAGAATATTTAAATGGACATTAATGAGttgcaataaaatgaaaagcaCTACAAGCGAATGGTATTCGTGGTGTCGTTTATGTGGAGATAAGGATTCTCACAAACATATGGAGCTATTTCTCCCGGGCGAACTTGAAGCTGTAATAGGAGATGGGAACAAGTACATAGCCCAAGTTATAGAAAAGCATTTCGCTTTAAAGATATCAGTTGATGACGTTTTGCCCAAGATGATATGCCAGCaatgttataaatttctaCGCATTGTGATGCAGATTAACGACAGTATTCTCAAGGTTCAAGAAATGTTCCAAAAACTATATGAGAGCAAGTTGGAAATGGACAAGCAATCAACTAATAGTGAAATAAACGTTGGAGAGAATGCAAGTCTTGGTGGTAATTTAGCTGCGGAAGATGTTTTACGTGCAGAAACACAAGTAAGCATTGATAGACTGCAACGGCGAAACAAAGAACACTCCGAAATGGATATAGTTTGTAAAGATTGTGGTGAGAGATTCCAATATTTTAAACCGTATCGCCAGCATTTAAAAGAACAACATGGCAATCGCACAGATCACGGTTTGGGGAGGCAATGCTTGCTATGCGGGGAGATATCGAATTCAAATACCACCTTTAGGAAACATTTGTTAACACATGAAAATTCGAGCCAAACATTTGCAAATAATTTATCCGATAATAATGTACCAACTGAGCAACTACTGCCCTGCCCAGAATGCAAAGAACAATTTCCAAATCAGAGGAAGCTGCAACAGCACCAGAAAAATTTCCACAAGAAGCCGAATACCATGGAAAAGCCGAAAGTAAAGAAACCTGCTGAACCACAGAAATTTATCTGTGAAGAGTGTGGAGCTTGTTTGCGCAATAGCGTCAATCTGAAAATTCATTTGCAACGTCACAGTGACAATGCGCCTTTCGAGTGTGAAGTATGTAAAAAACGATTTAAAAATCCCAGAAGACTCAAGATTCATAGCGAAACGCACACTTCTCACAAACACATTTGCCCCATTTGCGGTCTTCAATTAAATGCCAAAAATACCCTGAGACGCCACAGACTGGTGCACAGTAATGAGAGGAAACACAAATGTGATTATTGTGGACGAGGTTTTAAATCGTCGGACGGTTTAAAATCACATTTAATGGCTCATGCCGGCATCAAGCCGTATGCTTGCAATTTTTGTGATCGCGCTTTCACTTGTGCGGTAAATTGTCGGCAACATAAAAAGAATAAGCATGCCAAAGAATTGGATGCTTTAGAGGCAAACGGTGGCGCCGaacaaattgtacaaaaaatccCCTCTTTGGAAACGTTAAAAGCACTCATGAAAGGTGCTAGCGGAGGATTAAATCCTGTGGCTAAATATAAGCGTAAAGAAAATATCAGACGGCAATCTCATGACTGTTTCCTAATAATGACATCTACAGAAGATTCGGGTACAAAACTGTCTATTGACCCCAACAAATGGCAATTTTGGTGTCGTTTGTGCGGAAGAATCGATTCACAGCATCACATAGACATATTTCGAGATGTACAATATATGGCATCCGGTGAACAAGAAATATCACTTAGTCAAGCAATTGAGAAATTCCTAGCCGTACAGATATCCCAAAAAGATAATTTCTCCAAAAGGGTGTGTCCTTATTGTAttgaacaaattaaaaatctgATTGGTTACCGTGAACGCGTCCATAAGGTGCAACAAATGTTTGAAATGATTTGCAAAAGTGCAATTGAAACCCAGAACCTTGAACAATTGCGTTCAAAGTTTGGTATTAGTGAAGAGGAAAGCACCAGCACTATATCTGGGAAACTATTATTGAAGGTAAAAGAATACAAACCAAAAGACATGTCAGCAAATGATGAGAAACTGAAAGTTGAAGACGTGTCAGCTGAGGACTGCGGCCATCTTGAATATGATAAGGAATCCTTAAGCTCCCACGCCCTGACCAATGAAGATCCCCTAAGTAGCATAAGCGAGAGTCAATCATGCGAGATGGCAGCATCCAAGAATCGCAAGAAGAAAACTAAGACAAACGTGCAGCAGATAAGATGCAAATTACGCAATAACAAGGAAAGAGTTGATTATGGAGTGGAATGTgttaaattgaatattatttgTAGTAAGTGCCAGCAGAAGTTTGACTCTTTCGAGCCGTATCGTAGTCATTTGGTAGAGAAACACAACAAGGTGgagaaaacgaaaaaatggGAATGTCCTACATGCACGAAAATCCTAACATCCAGTTGCCGTTTAGAGCGCCACCTTAGATCGCATATACCTCGCGACGAACCGGACGTATTGCCATGTCCAGATTGTGGTAAAAAATTTCTCAACAATTCACGTCTACGCGCCcacatacaatataagcaTAATTTGGAGCGTTTCGTATGCGAAGAGTGCGGTGCCTTTATAACCACCAAAGCCAATCTAAAGTTTCATATGCTGACGCACCGAGATTATGCGCCCTTTGAGTGTGAAGTGTGTAAAAAACGATTCAAGCACGCTAGACGTCTAAAGATTCACATGGATACGCACGACAATCGGAAACATGTTTGCAATATATGCGGCTTACAGTTGAACACTCGCATCACTCTGAGAAGTCACATGTCCGTACACAACGACGTAATGAAGTACAAGTGTGAATTCTGTGGGCGTGGTTTCAAATTGatgaaaacattaaaatttcacttgATATCGCATACCGGCCTCAAACCGTATACATGTGACTTTTGCGATCGGGCCTTTACCAACAATGCCAACTGTCGCCTGCACAAAATGAAGATACATCCCGACGAATGGGCGGCATTAGAAAAGTCAGGTGACCCGAAGAAAATGCATCGCCTGCCCAATATGGAAACGTTGAAAGCCTTGTAA
Protein Sequence: MLPFTVITDHASLKWLMSLKDLSGRLARWSLKLQKYDFNIEHRKGAQNIVADTLSRLVEELECLDDQILGFETTEFEREEYTNLIRNIQSSQERIFKWTLMSCNKMKSTTSEWYSWCRLCGDKDSHKHMELFLPGELEAVIGDGNKYIAQVIEKHFALKISVDDVLPKMICQQCYKFLRIVMQINDSILKVQEMFQKLYESKLEMDKQSTNSEINVGENASLGGNLAAEDVLRAETQVSIDRLQRRNKEHSEMDIVCKDCGERFQYFKPYRQHLKEQHGNRTDHGLGRQCLLCGEISNSNTTFRKHLLTHENSSQTFANNLSDNNVPTEQLLPCPECKEQFPNQRKLQQHQKNFHKKPNTMEKPKVKKPAEPQKFICEECGACLRNSVNLKIHLQRHSDNAPFECEVCKKRFKNPRRLKIHSETHTSHKHICPICGLQLNAKNTLRRHRLVHSNERKHKCDYCGRGFKSSDGLKSHLMAHAGIKPYACNFCDRAFTCAVNCRQHKKNKHAKELDALEANGGAEQIVQKIPSLETLKALMKGASGGLNPVAKYKRKENIRRQSHDCFLIMTSTEDSGTKLSIDPNKWQFWCRLCGRIDSQHHIDIFRDVQYMASGEQEISLSQAIEKFLAVQISQKDNFSKRVCPYCIEQIKNLIGYRERVHKVQQMFEMICKSAIETQNLEQLRSKFGISEEESTSTISGKLLLKVKEYKPKDMSANDEKLKVEDVSAEDCGHLEYDKESLSSHALTNEDPLSSISESQSCEMAASKNRKKKTKTNVQQIRCKLRNNKERVDYGVECVKLNIICSKCQQKFDSFEPYRSHLVEKHNKVEKTKKWECPTCTKILTSSCRLERHLRSHIPRDEPDVLPCPDCGKKFLNNSRLRAHIQYKHNLERFVCEECGAFITTKANLKFHMLTHRDYAPFECEVCKKRFKHARRLKIHMDTHDNRKHVCNICGLQLNTRITLRSHMSVHNDVMKYKCEFCGRGFKLMKTLKFHLISHTGLKPYTCDFCDRAFTNNANCRLHKMKIHPDEWAALEKSGDPKKMHRLPNMETLKAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115174;
90% Identity: iTF_01115174;
80% Identity: -