Ochl002191.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- Rfx2
- Assembly
- GCA_963971445.1
- Location
- OZ020529.1:25454017-25460223[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.32 3.7e+03 -1.0 0.6 11 46 128 163 120 165 0.77 2 3 2.8e-38 3.3e-34 117.7 0.1 3 78 374 449 372 450 0.97 3 3 1.3 1.6e+04 -3.0 0.1 25 43 832 850 830 853 0.83
Sequence Information
- Coding Sequence
- ATGCATCCGCGATTAAATTGGGaccagcaacagcaacaactacaattacaacaacatatacGATTTAAGTGCCATTGCAAGGTGCAATCGCACCACCAAGCACTCAGCtgcagcaacaaaaacattgACAAAAATAACCACTGCTCAAATCGATGCCAGTGCAGTCATCAACAATATCGACCAAAgtatcaccatcatcatcacttgcaacaacaattgcaaacGGGCCTCTACCAAAAACATCACCATCAGAAACAGCAAAATAGTTATCAATATCAATCAAtagctgttgctgctgctgctgctgccgccACCACTGTGTTACCGATCAAATCTTATCCAGCATCGTGTGCTGAACCTCAGTTTgttcaacaacagcagcaacaacaacaacaacaacaacaatcgaTTTCTCACCATTTACACCATCATCActaccatcatcatcaccatcaagCATTTACCGCATCCGCGACAACTACAAATTTTTCAGCATCATCCTCATCATCCTGTGCCGCCGCTTCAATCGATCACTCATCCACAGCGACTTCTATTAATCAACTGGGGACGACAGGAACGACCATGTATCGCCGCCAAAATAATTTATCCTATTGTGGTGtatCCGCTCAAGATGCTGGTCAAAACTATCAAGTACAATACGTTGACACCGACATATATCATAGCAACTCTAGTCAAACTCAAATGGCCTATCCGTTTTGTGCCGTTGGAGATTACCAAACGAATGGACAGTCTTATTATACCACCACAGCCACCGGTAATTATACATCATCAGGAGGCTTGAATACACCAAATACACATGCGGCATCTGCTGCTCTGTCATACCTGGTGCCAGTTGATGACAATCTGTTACTGACTTCGTCATCGCAATCGCACAGCCGAGACTCGCCGAATAGTTTAAATGAGGTGGCTTATCTGCACGAAGCGCATGGTACACCCCAAACGAATGCTTCAATGGCAACGATTGCCAACTCAATTGGCTGCGACGGTGGTGACGGTGGTATGAGTTCTGGTGCCAACAATGTGTGCAGTGGTGGTGATACCACACCAGAAAACGACCAAACACACTTGAACAGCAATACTACGAATAAAATTGCTTCGGCAACGATAAAATGGCTGTCGCGAAATTACGAAACTGCAGATGGAGTCAGTCTGCCACGCTCTACTCTTTACAATCATTATATACAGCATTGCAATGAGAATAAAATCGAACCAGTTAATGCGGCCAGTTTTGGGAAATTAATACGCTCGGTGTTTTCTGGTTTGCGTACGAGACGTTTGGGTACACGCGGCAACTCTAAATATCATTACTATGGCATACGCATTAAACCGGACTCCCCGCTAAACCAAATGATGGAAGAAAAAGACTCCTTTATATTACAAGCGGCTACCTCGTCCGGGGGCGTAGGTAAAACAACAGGCGGAGGTAACCCAATTTTTCAAATGAGTGGCAGCAGTCTCCAAGATAGTCGTATTGGTCCATCTCGCGGTGGCATTCACGTCAGTAGAACTTCCAAAAAACACTATTTTAAACCAGTGTCCTATGAAACGTGTGCTCAATTCTTGGGTAATGGATCGGCAGCCATACCGCCATTTCCTCCCATTAAATTGGACAACACTTTTGGCAGTGAACTAACTAATGAAGATGTGGATTTGTTTCGCTCCATGTATCGTGAACACTGTGAAAATTTTCTGGATGCTATTCTGAATTTGGAGTTTCATACGATTGAATTTTTATGGCGTGAATTTTGGCGCGATAGTAGCATCGACAATAGCAGTCTAGGCGACGATTGTGTTGGGACCAGTGACGAGAAGTTTTTAAGCAAAACCAAGTTGCACTTGTTATGTCATTGTACAGCCGTTCAACGATTTGTGCAAGAGGTGGACTATCAATTTTATCAAAACTTAGTTGAAATCATTGTACCGGATGTATTGCGTTCGATACCAAATGCACTTACTCAGGCTATACGTAATTTTTCGAAAAACATGGAAGCCTGGTTATGTGAATCTATGCTTGGGGTACCGGAGCGCATGCTGCATATAAAGTCTGTGGCGGTGTCAGCTTTCTGCCAAACCCTACGACGTTACACATCTTTGAATCATTTGGCACAAGCTGCTCGAGCTGTTTTGCAGAACAGCACACAGTGCGCTCAAATGTTGCATGATTTGAATCGTGTTGACTTCCATATTGTGCAGGAACAGGCAGCTTGGGTTTGTCAATGCGATCCAATTGTTGTGCAACGTTTAGAAAATGGTTTTAAAGCTGCCTTGCAACAGCAGAGCACCTTGGAACAGTGGGCTACTTGGCTACAATTGGTCGTCGACTCAGCATTACAAGACTGTCAAGGAAAGCCCAGCTTTGAGAAAGCATGTCGTCAGTTTCTACTCAAGTGGAGCTTTTACAGTTCCATGGTTATCCGAGATCTCACTTTACGTTCAGCCCCTAGTTTTGgtagttttcatttaatacgGCTTCTGTACGATGAGTATATGCTCTACTTGGTGGAACATAAAATAGCTGAAgttcaacaaaaaacaacaattgccGTAGTTTGTGATCACGTAAAGAGAGATGCCGAGAGCGAGTTCGATTATCAAGTGGAGTTTATAGCATCAGAAAGCACGGGTTCTGAGCAAGCATCCAAACGTTCAAAACAGGAATGA
- Protein Sequence
- MHPRLNWDQQQQQLQLQQHIRFKCHCKVQSHHQALSCSNKNIDKNNHCSNRCQCSHQQYRPKYHHHHHLQQQLQTGLYQKHHHQKQQNSYQYQSIAVAAAAAAATTVLPIKSYPASCAEPQFVQQQQQQQQQQQQSISHHLHHHHYHHHHHQAFTASATTTNFSASSSSSCAAASIDHSSTATSINQLGTTGTTMYRRQNNLSYCGVSAQDAGQNYQVQYVDTDIYHSNSSQTQMAYPFCAVGDYQTNGQSYYTTTATGNYTSSGGLNTPNTHAASAALSYLVPVDDNLLLTSSSQSHSRDSPNSLNEVAYLHEAHGTPQTNASMATIANSIGCDGGDGGMSSGANNVCSGGDTTPENDQTHLNSNTTNKIASATIKWLSRNYETADGVSLPRSTLYNHYIQHCNENKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPDSPLNQMMEEKDSFILQAATSSGGVGKTTGGGNPIFQMSGSSLQDSRIGPSRGGIHVSRTSKKHYFKPVSYETCAQFLGNGSAAIPPFPPIKLDNTFGSELTNEDVDLFRSMYREHCENFLDAILNLEFHTIEFLWREFWRDSSIDNSSLGDDCVGTSDEKFLSKTKLHLLCHCTAVQRFVQEVDYQFYQNLVEIIVPDVLRSIPNALTQAIRNFSKNMEAWLCESMLGVPERMLHIKSVAVSAFCQTLRRYTSLNHLAQAARAVLQNSTQCAQMLHDLNRVDFHIVQEQAAWVCQCDPIVVQRLENGFKAALQQQSTLEQWATWLQLVVDSALQDCQGKPSFEKACRQFLLKWSFYSSMVIRDLTLRSAPSFGSFHLIRLLYDEYMLYLVEHKIAEVQQKTTIAVVCDHVKRDAESEFDYQVEFIASESTGSEQASKRSKQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00384312; iTF_01114750;
- 90% Identity
- iTF_00384312;
- 80% Identity
- -