Cpal004319.1
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- Rfx2
- Assembly
- GCA_949710015.1
- Location
- OX453290.1:9669898-9675339[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2 1.8e+04 -3.9 0.6 10 30 40 60 34 70 0.57 2 4 1.2 1e+04 -2.8 0.2 15 46 125 156 121 157 0.73 3 4 2.8e-38 2.4e-34 117.7 0.1 3 78 364 439 362 440 0.97 4 4 1.3 1.1e+04 -3.0 0.1 25 43 822 840 820 843 0.83
Sequence Information
- Coding Sequence
- ATGCATCCGCGATTAAATTGGgatcagcaacagcaacaactacaattacaacaacatatacgATTTAAGTGTCATTGCAAGGTGCAATCGCACCACCAAGCACTCAGctgcagcaacaaaaacattaacaaaaataatcacTACTCAAATCGACGCCAGTGCAATCATCAACAATATCGACCAAAgtatcaccatcaccatcacttGCAACAACAATTCCAAACGGGTCTATACCAAAAACATCATCATcagaaacaacaaaataattatcaatatCAATCAAtagctgttgctgctgctgctgccgccACTGTGTTACCGATCAAATCTTATCCTGCATCGTGTGCTGAACCTCAGTTTgttcaacaacagcaacatcaacaatCGATTTCTCACCATTTACACCATCACCActaccatcatcatcaccatcaagCATTTACCGCATCCACGACTACGACAAACTTTTCACCATCATCCTGTGCCGCCGCTTCAATCGATCACTCATCCACAGCGACTTCTATTAATCAATTGGAGACGATAGGAACGACCATGTATCGCCGCCAAAATAATTTATCCTATTGTGGTGtATCCGCTCAAGATGCTGGTCAAAACTATCAAGTACAATACGTTGACACCGACATATATCATAGCAACTCTAGTCAAACTCAAATGGCCTATCCGTTTTGTGCCGTTGGAGATTACCAAACGAATGGTCAGTCTTATTATACCACCACGGCCACCGGTAATTATACATCATCAGGAAGCTTGAATACACCAAATACACATGCGGCATCGGCTGCTCTGTCATACCTGGTGCCAGTTGATGACAATTTGTTACTGACTTCGTCATCGCAATCGCACAGCCGAGATTCGCCGAATAGTTTAAATGAGGTGGCTTATCTGCACGAAGCGCACGGTACACCCCAACCGAATGCTTCAATGGCAACGATTGCCAACTCAATTGGCTGTGATGGTGGTGACGGTGGTATGAGTTCCGGTGCCAACAATGTGTGCAGTGGTGGTGATACCACACCAGAAAACGACCAAACACAATTGAGCAACAATACTACGAATAAAATTGCTTCGGCAACGATAAAATGGCTGTCGCGAAATTACGAAACTGCAGATGGAGTCAGTCTGCCACGCTCCACTCTTTACAATCATTATATACAGCATTGCAATGAGAATAAAATCGAACCAGTTAATGCGGCCAGTTTTGGAAAATTAATACGCTCGGTGTTTTCTGGTTTGCGTACAAGACGTTTGGGTACACGCGGCAACTCTAAATATCATTACTATGGCATACGCATTAAACCGGACTCCCCGCTAAACCATATGATGGAGGAAAAAGACTCCTTTATATTACAAGCGGCTACCTCGTCCGGAGGCGTAGGTAAAACAGCAGCCGGAGGTAACCCAATTTTTCAAATGAGTGGCGGCAGTCTCCAAGATAATCGCATTGGTCCATCTCGTGGTGGCATTCACGTCAGTAGAACTTccaaaaaacattattttaaacCAGTGTCCTATGAAACGTGTGCTCAATTCTTGGGTAATGGATCGGCAGCCATACCGCCATTTCCTCCCATTCAATTGGACAACACATTCGGCAGTGAACTAACTAATGAAGATGTGGATTTGTTTCGCTCCATGTATCGTGAACACTGTGAAAATTTCCTGGATGCTATTCTGAATTTGGAGTTTCAtacaattgaatttttatggcGTGAATTTTGGCGCGATAGCAGCATCGACAATAGCAGTCTAGGCGACGATTGTGTTGGGACCAGTGAAGAgaaatttttaagcaaaacCAAGTTGCACCTGTTATGCCATTGTACAGCCGTTCAGCGATTTGTGCAAGAGGTGGACTATCAATTTTATCAAAACTTAGTTGAAATCATTGTACCGGACGTATTGCGTTCGATACCAAATGCACTTACTCAGGCTATACGtaatttttcgaaaaacaTGGAAGCCTGGTTATGTGAATCTATGCTTGGGGTACCAGAGCGCATGTTGCATATAAAGTCTGTGGCGGTGTCAGCTTTCTGCCAAACCCTACGCCGTTACACATCTTTGAATCATTTGGCACAAGCTGCTCGAGCTGTTTTGCAGAACAGCACACAATGCGCTCAAATGTTGCATGATTTGAATCGTGTTGACTTTCATATTGTTCAGGAACAGGCAGCTTGGGTTTGTCAATGCGATCCAATTGTTGTGCAACGTTTAGAAAATGGTTTTAAAGCTGCCTTGCAACAGCAGAGCACCTTGGAACAGTGGGCTACTTGGCTACAATTGGTCGTCGACTCAGCATTACAAGACTATCATGGAAAACCCAGTTTTGAGAAAGCATGTCGTCAGTTTCTACTTAAGTGGAGCTTTTACAGTTCCATGGTTATCCGAGATCTCACTTTACGTTCAGCCCCTAGTTTTGGtagttttcatttaatacgGCTTTTGTACGATGAGTATATGCTCTACTTGGTGGAACATAAAATAGCTGAAgttcaacaaaaaacaacaattgccGTAGTTTGTGATCATGTAAAAAGAGATGCCGAAAGTGAGTTCGATTATCAAGTAGAGTTTATAGCATCAGAAAGCACGGGTTCTGAGCAAGCATCCAAACGTTCAAAACAGGAATGA
- Protein Sequence
- MHPRLNWDQQQQQLQLQQHIRFKCHCKVQSHHQALSCSNKNINKNNHYSNRRQCNHQQYRPKYHHHHHLQQQFQTGLYQKHHHQKQQNNYQYQSIAVAAAAAATVLPIKSYPASCAEPQFVQQQQHQQSISHHLHHHHYHHHHHQAFTASTTTTNFSPSSCAAASIDHSSTATSINQLETIGTTMYRRQNNLSYCGVSAQDAGQNYQVQYVDTDIYHSNSSQTQMAYPFCAVGDYQTNGQSYYTTTATGNYTSSGSLNTPNTHAASAALSYLVPVDDNLLLTSSSQSHSRDSPNSLNEVAYLHEAHGTPQPNASMATIANSIGCDGGDGGMSSGANNVCSGGDTTPENDQTQLSNNTTNKIASATIKWLSRNYETADGVSLPRSTLYNHYIQHCNENKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPDSPLNHMMEEKDSFILQAATSSGGVGKTAAGGNPIFQMSGGSLQDNRIGPSRGGIHVSRTSKKHYFKPVSYETCAQFLGNGSAAIPPFPPIQLDNTFGSELTNEDVDLFRSMYREHCENFLDAILNLEFHTIEFLWREFWRDSSIDNSSLGDDCVGTSEEKFLSKTKLHLLCHCTAVQRFVQEVDYQFYQNLVEIIVPDVLRSIPNALTQAIRNFSKNMEAWLCESMLGVPERMLHIKSVAVSAFCQTLRRYTSLNHLAQAARAVLQNSTQCAQMLHDLNRVDFHIVQEQAAWVCQCDPIVVQRLENGFKAALQQQSTLEQWATWLQLVVDSALQDYHGKPSFEKACRQFLLKWSFYSSMVIRDLTLRSAPSFGSFHLIRLLYDEYMLYLVEHKIAEVQQKTTIAVVCDHVKRDAESEFDYQVEFIASESTGSEQASKRSKQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01113947;
- 90% Identity
- iTF_01113947; iTF_01114750;
- 80% Identity
- -