Basic Information

Insect: Ormyrus nitidulus
Gene Symbol: -
Assembly: GCA_900474335.1
Location: UCOL01002756.1:10924-14487[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0055 0.72 11.2 0.3 1 20 110 129 110 130 0.96

2 13 0.011 1.4 10.3 4.6 2 23 262 284 262 284 0.91

3 13 1.7e-05 0.0023 19.0 1.4 2 23 342 364 341 364 0.95

4 13 7.4 9.8e+02 1.3 7.4 3 23 447 468 446 468 0.86

5 13 0.017 2.3 9.6 1.5 1 23 517 540 517 540 0.95

6 13 0.0002 0.026 15.7 0.0 3 23 589 610 588 610 0.96

7 13 0.0025 0.32 12.3 0.1 3 23 646 667 645 667 0.94

8 13 0.0085 1.1 10.6 3.7 2 23 711 733 710 733 0.96

9 13 0.029 3.9 8.9 2.7 3 23 748 769 746 769 0.94

10 13 6.5e-06 0.00085 20.4 0.2 2 23 814 836 814 836 0.96

11 13 3.8 5e+02 2.2 2.3 1 23 928 952 928 952 0.97

12 13 4.5e-05 0.0059 17.7 0.1 2 23 970 992 969 992 0.96

13 13 0.0049 0.65 11.3 0.8 1 23 1076 1099 1076 1099 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0055	0.72	11.2	0.3	1	20	110	129	110	130	0.96
2	13	0.011	1.4	10.3	4.6	2	23	262	284	262	284	0.91
3	13	1.7e-05	0.0023	19.0	1.4	2	23	342	364	341	364	0.95
4	13	7.4	9.8e+02	1.3	7.4	3	23	447	468	446	468	0.86
5	13	0.017	2.3	9.6	1.5	1	23	517	540	517	540	0.95
6	13	0.0002	0.026	15.7	0.0	3	23	589	610	588	610	0.96
7	13	0.0025	0.32	12.3	0.1	3	23	646	667	645	667	0.94
8	13	0.0085	1.1	10.6	3.7	2	23	711	733	710	733	0.96
9	13	0.029	3.9	8.9	2.7	3	23	748	769	746	769	0.94
10	13	6.5e-06	0.00085	20.4	0.2	2	23	814	836	814	836	0.96
11	13	3.8	5e+02	2.2	2.3	1	23	928	952	928	952	0.97
12	13	4.5e-05	0.0059	17.7	0.1	2	23	970	992	969	992	0.96
13	13	0.0049	0.65	11.3	0.8	1	23	1076	1099	1076	1099	0.98

Sequence Information

Coding Sequence: ATGTCCTCGAGCCAGGAGACATGCCTACCAGAGTCGACGGAGATCGATAGCGAGGGTTCGAGCTGCGAGGAGCGAGAGTCCCGCAGGCGGCTCCTCGGCGATCCCGAAGGCCTGCCCAAGAAGCGGCGGAAGCAGTCGACGCCCGTCAAGTTCTCGACCTCGCTCACCGTCGGCGAGTACGACGAGTCCGaagaggagcagcagcagcaacagccgGCCGCCGACCAACAAGCGAGGAAGAACGGCGAGCTGGAAGGTAAGCCGACGAGCGCGCCGCACCTCAAGTCCATCCAGAGCCATCCGAAAGACGAGAATCTGAACAATGAATTTCGCTGCCAGTATTGTAGTCAATTTTTCGATAACCGCGTCGCGCTCGAGCTGCACCTCGAGTGCGAGCACAACGCCTCGGGCAGCGGGGGCGCCGCGCTGCAGGGCTGCCCCTCGAGCAACGACAGCTCGCCGCAGGTGCAGCCCTGCCTCAGCCCGGACGCGAGCGCGGCCCTGCCGCTCCTCCACTCCGAGCAGTCCGTCAGTCCCATCAACCTCTCGGGCATCAGCATCAGAAACTTCGCGGCCACCACGTCCTGGCTGACGGGCCAGAGCGAGGCCAACTCGCTGGCCAAGCTCGCGGCCGGCAGGGCCGGCAACCACTTTCAGCCGACGGCGGCCTTCCCCGCTCCTCTGGCCCAGTTCCTGCCGATGCCCGGCTTCCCCATGCCGGACTCCACGCAAATCCAGCGGGCGGCCATGGCCCAGTTCCCAAAGATATTCAATCCCGACGCGTACTGTGATCTCTGTAATAAGGAATTTTGCAACAAGTACTTTCTTAAGACGCACAAGGCCAACAAGCACGGAATCTACGTCGATCCGCCGATCAATCCATCCCAAGCCAACGACGGCAACGCGGCCTCGAGCTCCTTCGTCACCAGCAATTCGCCCAGCAACTTAACGAGCATCAAGCTGCCCGAGCAGCCGCCGAGGCTCGAGAACAACGGCCTGCTGCAGCAGCAGGCCCCGACTCTACCCTGTGATATGTGCACCAAGCGCTTCAAAAACGAGGACTCGCTGAGAAAGCACAGGCAGAAGATTCACCTGAATCCCAGTAACGATATCATCGATTCCACGCAAATGCAAATGAGCCtgccggccgccgccggcgaCGAGGAGCGACAGAGCCCCGGCGGCATGGAAACGCTCTTCAAACAAGAGTACAACATCGATCAAGACGAGTCGCCCTACGACGCGTCGACCCCGAGACCTCTGGACATGTCGCCTCCTCTGTCCCAAGCCAACGGAGATCGGTTAAGACGCCTGGGCGTCATGAATCCGGAGGCGTTCTGCGAGATCTGCTGCAAGGAGTACTGCAACAAGTACTTCCTTCGCACCCACAAGCTCAAGAGGCACTCCATCCTCGTGCCCGACAACGATAAATCGCCGAACGCCCCCGTCTCCGGAGCCAGCTGGCATCAAGTGCAAACGAGCCCTCTGAACCTCATCATGGGCGACAGCCTGGGAAACGGATCAGAGTCCGGCGACCGCACCGAGGAATACGCCTGCCGATCCTGCGGCATCCGCTTCCAGACTCAGAGCCTCTATCACCTGCATCTCGAAAAGATTCACGAGAGCGGCGAACAGCTGTCGCCGAGGCCCGAGCCGGATATCGATCCGATGGACCAGAGAACCGACTCCATCTCCGAGGATCTTCAGAAGCTACAGACCATGATTCTGCAGCTGAACGGCCTCGAATCGAACAAAGCAGCTTCCTGCGCACTTTGCGGCAAGGACTACGACACCCCCGGCGCACTCAGGAGTCACATGATCACGGAACACGGCGTCGAGTCGGACAATTTGATACcaacgcagcagcagcagcagcagcagcaacaacaactaGTCCAAGAGAAGCCCGCTCCCACTGTCGTCGCGCAAACGCTCTGCAACCTCTGCGAGCGGGAGTACCCCAACCAAGAAGCCTTGAGAAAACATATCGCGGAAGACCATCAGCCGTCGACGCCCACGAGCTCGACGACGCCTCAGCTCCCGTCGTCCTCGGTGCCCACGACCCCGAAATCCAACCCCGCCCAGTCGGCGGAGAGAAAGGCCACCGCTTCCATCACTCCCACCTCGAGCTACTGCGAGATCTGCAACAAGGAGCTCTGCAACAAATACTTCATGAAGACCCACATGCAGAAGATGCACGGAATCGAGATCGAGAACGGGGCGCAGATCGGCGGCGTCATCTGCAACATCTGCAAGAAGGAACTCTGCAGCAAGTACTTTCTCCGCGTTCACAAGCAAAACACCCACGGCATCGTCGAGGAAGGCGCCTCCGCCGGCAAGCAGGAGAGCTTCGAGCCGCCCGCTAATTCGGACGATCTGGCTCTCAAGCCCGAGCAGCTCGGCGATCTCAACCTTCGATACATCACCCACTTTACGGAGGTCTGCCCGATCTGCAATCGCCGATTCCGCAGTCCCAAGTGGCTGAAGGTGCACTTGCAAAGCGAACACGGAAAGGCGGGGATAGACAAGTGGCGCGAGATCGAGCAATACCATCAATCGACGATAAAGAGCCCCGTCCGAGTTGCCAACGTACCGAAAAGctctcagcagcagcagcagcagcagcagcagcaactgCAGCAGTCGCACGGCAACGCCAGTCTCAGGATACCCAACGGCTTCGAGCCGAATCAGCAAATAAGAGCAGACCTAGCCGCTCTCGGGAATCAAGTCCTCTCGAACTTCTTCGGCAGCTCGAACGAAGACCAGCCGACCCAGACTTACCGCTGCTCCCAGCTTCACTGCAACTTCTCGACGTCGATCCTGCCGCTGTTCTTCCTGCACGAGAGATCCCACAGCCAGCAAGAgaacgcagcagcagccgcccaGGAGAGCGAGCGGCTCACCCAGTGTCCGATCTGCGCCCAGAGCTTCGCCCAGCCGGAACTGCTGCGCCAGCACATCGCCACCCGGCACATGCTCAATCACGGCAGCCCGGGCCCGTTCCCGGGCCTCCTCTCCCAGTTCCCCATGCCCCTCCTCGGCGAATTCGCCCTGGGCAACGAGCAGCAGCAACCCCAACAACAACCCCAAGAGCGCGAGTTCGCCGAGGCGAAGGAGGAGTTCCGCCAGTCGAGTCCCCAGATAATGAACGAAATCGACACGAACAAGATGAAGAAGGCCGAGGAGAAGATGCACGCGGTCCAGGTGATGCCCCAGGGCGCCTACAAGTGCTCCCAGTGCGGCTTCGCCACCGCCAATCTCAACCGCATCAAGAAGCACATACGCAAGGATCACAAGAGCCTCGGCGACCCGACCGAGACCGCCCTCACCGAGCTCGTCAAGACCCTCAAGGACGTGGCTAACAAGCACAAGGTGCCGGCGAGCTACGCCATGCCCCAGGACGACAAGCACTGCCCCCTGATGCAGCCCTTCATAATCGAGGAGCTCGACGCCGAggagcagccgcagcagcgcCGATTCGCGCCCGCCCTGGTTTTCCTGCCCGTCAACGCCAGGGTGAACGGCGCCCTCACCCTCTCCTTCACGCTCAATCCCGCCTGA
Protein Sequence: MSSSQETCLPESTEIDSEGSSCEERESRRRLLGDPEGLPKKRRKQSTPVKFSTSLTVGEYDESEEEQQQQQPAADQQARKNGELEGKPTSAPHLKSIQSHPKDENLNNEFRCQYCSQFFDNRVALELHLECEHNASGSGGAALQGCPSSNDSSPQVQPCLSPDASAALPLLHSEQSVSPINLSGISIRNFAATTSWLTGQSEANSLAKLAAGRAGNHFQPTAAFPAPLAQFLPMPGFPMPDSTQIQRAAMAQFPKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDPPINPSQANDGNAASSSFVTSNSPSNLTSIKLPEQPPRLENNGLLQQQAPTLPCDMCTKRFKNEDSLRKHRQKIHLNPSNDIIDSTQMQMSLPAAAGDEERQSPGGMETLFKQEYNIDQDESPYDASTPRPLDMSPPLSQANGDRLRRLGVMNPEAFCEICCKEYCNKYFLRTHKLKRHSILVPDNDKSPNAPVSGASWHQVQTSPLNLIMGDSLGNGSESGDRTEEYACRSCGIRFQTQSLYHLHLEKIHESGEQLSPRPEPDIDPMDQRTDSISEDLQKLQTMILQLNGLESNKAASCALCGKDYDTPGALRSHMITEHGVESDNLIPTQQQQQQQQQQLVQEKPAPTVVAQTLCNLCEREYPNQEALRKHIAEDHQPSTPTSSTTPQLPSSSVPTTPKSNPAQSAERKATASITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIVEEGASAGKQESFEPPANSDDLALKPEQLGDLNLRYITHFTEVCPICNRRFRSPKWLKVHLQSEHGKAGIDKWREIEQYHQSTIKSPVRVANVPKSSQQQQQQQQQQLQQSHGNASLRIPNGFEPNQQIRADLAALGNQVLSNFFGSSNEDQPTQTYRCSQLHCNFSTSILPLFFLHERSHSQQENAAAAAQESERLTQCPICAQSFAQPELLRQHIATRHMLNHGSPGPFPGLLSQFPMPLLGEFALGNEQQQPQQQPQEREFAEAKEEFRQSSPQIMNEIDTNKMKKAEEKMHAVQVMPQGAYKCSQCGFATANLNRIKKHIRKDHKSLGDPTETALTELVKTLKDVANKHKVPASYAMPQDDKHCPLMQPFIIEELDAEEQPQQRRFAPALVFLPVNARVNGALTLSFTLNPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01112085;
90% Identity: iTF_01112909;
80% Identity: -