Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 6.7e-06 0.014 16.2 0.4 19 41 148 167 144 169 0.92

2 5 0.15 3.1e+02 2.2 0.9 17 36 174 194 168 197 0.73

3 5 0.011 22 5.9 0.7 6 38 192 224 187 224 0.79

4 5 2.8e-05 0.058 14.2 0.4 18 40 231 250 227 253 0.89

5 5 0.16 3.2e+02 2.2 1.2 18 40 259 278 251 280 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	6.7e-06	0.014	16.2	0.4	19	41	148	167	144	169	0.92
2	5	0.15	3.1e+02	2.2	0.9	17	36	174	194	168	197	0.73
3	5	0.011	22	5.9	0.7	6	38	192	224	187	224	0.79
4	5	2.8e-05	0.058	14.2	0.4	18	40	231	250	227	253	0.89
5	5	0.16	3.2e+02	2.2	1.2	18	40	259	278	251	280	0.82

Coding Sequence: ATGATTATTTCAGATTCTGAAAACCGATCACGCAgagaatcttattttattctcaatatgcaaattaataaaaaacggaaCAGCTACGAGCAGAACTATACCGGCGCGTGGGGCGTGGAGCCTCTGCTGAGTCCCGCCCCCCAGTACGCGGGGGTCGATCAGCAGCAGAGGGTGAACCAAGCGGCGGCCAATAGCCTCgcagctgcggcggcggccgcggcggctgcggccACCTCCTCCGCTCACCCCCAGCctcaccaccaccaccaccaccaccaccagcacCAGCacccgcagcagcagcagcagcagcaccaggctcagcagcagcagcagcagccacagCCCGCGGCCGAGCACGCGCTCTGCGGGGCCGGGCCCGGACTCGCGGGCCAGGTGCCCACGGGCCTGGGCCAGGACGATCAGGCCCGGCCGAACCTCTGCAGGATCTGCGGGAAGACGTACGCCAGGCCCAGCACGCTCAAGACGCATCTCAGGACGCACTCCGGGGAGAAGCCATTTAGGTGCCACGCCTGCTCGAAAGCGTTCAGCCAGGCGGCAAATCTGACGGCTCACGCGAGGACGCACTCGGGAGAGAAGCCGTTTCGTTGTCCAGTCTGCGACAGGAGATTCTCTCAGAGCAGTTCTGTCACGACTCATATGCGAACTCACTCTGGGGAACGTCCCTATAGGTGTCGATTTTGCAAGAAAGCTTTCTCAGACAGTTCGACTCTGACGAAACACTTGCGGATCCACTCGGGTGAAAAGCCCTATCAATGTAAGTTGTGCTTGCTGAGATTCAGCCAAAGCGGAAACCTCAACAGGCACATGCGGGTCCACGGCGGTTCTTTAACGTGA
Protein Sequence: MIISDSENRSRRESYFILNMQINKKRNSYEQNYTGAWGVEPLLSPAPQYAGVDQQQRVNQAAANSLAAAAAAAAAAATSSAHPQPHHHHHHHHQHQHPQQQQQQHQAQQQQQQPQPAAEHALCGAGPGLAGQVPTGLGQDDQARPNLCRICGKTYARPSTLKTHLRTHSGEKPFRCHACSKAFSQAANLTAHARTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRFCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGGSLT

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01112016; iTF_01111261; iTF_01112093; iTF_01465601; iTF_01466497; iTF_01466541; iTF_01467374; iTF_01467409; iTF_01469918; iTF_01465637; iTF_01381577; iTF_01381505; iTF_01468268; iTF_01468233; iTF_01469071; iTF_00969853; iTF_00969820;
90% Identity: iTF_01112016; iTF_01111261; iTF_01112093;
80% Identity: iTF_01111261;