Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 6e-06 0.0091 16.3 0.4 19 41 120 139 117 141 0.92

2 5 0.14 2.1e+02 2.4 0.9 17 36 146 166 140 168 0.73

3 5 0.0097 15 6.1 0.8 6 38 164 196 159 196 0.79

4 5 2.5e-05 0.038 14.4 0.4 18 40 203 222 199 225 0.89

5 5 0.14 2.1e+02 2.4 1.2 18 40 231 250 223 252 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	6e-06	0.0091	16.3	0.4	19	41	120	139	117	141	0.92
2	5	0.14	2.1e+02	2.4	0.9	17	36	146	166	140	168	0.73
3	5	0.0097	15	6.1	0.8	6	38	164	196	159	196	0.79
4	5	2.5e-05	0.038	14.4	0.4	18	40	203	222	199	225	0.89
5	5	0.14	2.1e+02	2.4	1.2	18	40	231	250	223	252	0.82

Coding Sequence: TACGAGCAGAACTATACCGGCGCGTGGGGCGTGGAGCCTCTGCTGAGTCCCGCCCCCCAGTACGCGGGGGTCGATCAGCAGCAGAGGGTGAACCAAGCGGCGGCCAATAGCCTCgcagctgcggcggcggcggccgcggcggctgcggccACCTCCTCCGCTCACCCCCAGCctcaccaccaccaccaccaccaccagcaCCAGCACccgcagcaacagcagcagcagcaccaggctcagcagcagcagcagcagccgcagcccGCGGCCGAGCACGCGCTCTGCGGGGCCGGGCCCGGACTCGCGGGCCAGGTGCCCACGGGCCTGGGCCAGGACGATCAGGCCCGGCCGAACCTCTGCAGGATCTGCGGGAAGACGTACGCCAGGCCCAGCACGCTCAAGACGCATCTCAGGACGCACTCCGGGGAGAAGCCATTTAGGTGCCACGCCTGCTCGAAAGCGTTCAGCCAGGCGGCAAATCTGACGGCTCACGCGAGGACGCACTCGGGAGAGAAGCCGTTTCGTTGTCCAGTCTGCGACAGGAGATTCTCTCAGAGCAGTTCTGTCACGACTCATATGCGAACTCACTCTGGGGAACGTCCCTATAGGTGTCGATTTTGCAAGAAAGCTTTCTCAGACAGTTCGACTCTGACGAAACACTTGCGGATCCACTCGGGTGAAAAGCCCTATCAATGTAAGTTGTGCTTGCTGAGATTCAGCCAAAGCGGAAACCTCAACAGGCACATGAGGGTCCACGGCGGTTCTTTAACGTGA
Protein Sequence: YEQNYTGAWGVEPLLSPAPQYAGVDQQQRVNQAAANSLAAAAAAAAAAAATSSAHPQPHHHHHHHQHQHPQQQQQQHQAQQQQQQPQPAAEHALCGAGPGLAGQVPTGLGQDDQARPNLCRICGKTYARPSTLKTHLRTHSGEKPFRCHACSKAFSQAANLTAHARTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRFCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGGSLT

Sequence clustering based on sequence similarity using MMseqs2