Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 8.7e-06 0.03 16.2 0.4 19 41 135 154 132 156 0.92

2 5 0.2 6.9e+02 2.2 0.9 17 36 161 181 155 183 0.73

3 5 0.014 48 6.0 0.8 6 38 179 211 174 211 0.79

4 5 3.6e-05 0.12 14.2 0.4 18 40 218 237 214 240 0.89

5 5 0.2 6.8e+02 2.3 1.2 18 40 246 265 238 267 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	8.7e-06	0.03	16.2	0.4	19	41	135	154	132	156	0.92
2	5	0.2	6.9e+02	2.2	0.9	17	36	161	181	155	183	0.73
3	5	0.014	48	6.0	0.8	6	38	179	211	174	211	0.79
4	5	3.6e-05	0.12	14.2	0.4	18	40	218	237	214	240	0.89
5	5	0.2	6.8e+02	2.3	1.2	18	40	246	265	238	267	0.82

Coding Sequence: ATGTCAAAGCGTCTAAATGGTCTTGGTACGTTAATGTTCAGCTACGAGCAGAACTACACAGGCGCGTGGGGCGTGGAGCCGCTGCTGAGTCCCGCCCCCCAGTATGTCGGGGTCGATCAGCAGCAGAGGGTAAACCAGGCGGCAGCCAATAGCCTGGCGGCtgcagccgccgccaccgcctcgCACCCCCAAGCCCaccagcagccgcagcagcagcagcagcacaaccCTCacccccagcagcagcagcagccgccgccacaGCAGAGGCTCCAGCCGCAGCCACAGTCGGCGACCGAGCATGCGTTGTGTGGGGGCGCAGGCGCAGGCGCACTCGCGGCAGCCGGCCCAGGACTGGGACAAGTGTCGCTGGGCCAGGACGACCAGGCCAGGCCGAATCTCTGCAGGATATGCGGCAAGACCTACGCCCGGCCCAGTACACTCAAAACGCATCTCAGGACGCATTCCGGGGAAAAACCTTTTAGGTGTCACGCCTGCTCGAAGGCGTTCAGTCAAGCGGCAAATTTAACAGCACACGCGAGGACGCACTCGGGAGAAAAGCCCTTCCGCTGTCCGGTGTGCGACAGACGATTTTCTCAGAGCAGCTCTGTCACGACGCATATGAGAACGCATTCCGGGGAACGGCCCTACAGGTGTCGATTCTGCAAGAAAGCCTTCTCCGACAGTTCGACTCTGACGAAACACTTGCGCATCCACTCGGGTGAAAAGCCCTATCAATGTAAGTTGTGCTTGCTAAGATTCAGCCAGAGCGGAAACCTCAACAGGCACATGCGGGTCCACGGCGGCTCTTTGACGTGA
Protein Sequence: MSKRLNGLGTLMFSYEQNYTGAWGVEPLLSPAPQYVGVDQQQRVNQAAANSLAAAAAATASHPQAHQQPQQQQQHNPHPQQQQQPPPQQRLQPQPQSATEHALCGGAGAGALAAAGPGLGQVSLGQDDQARPNLCRICGKTYARPSTLKTHLRTHSGEKPFRCHACSKAFSQAANLTAHARTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRFCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGGSLT

Sequence clustering based on sequence similarity using MMseqs2