Ooch001471.1
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- Mbd2
- Assembly
- GCA_963402855.1
- Location
- OY727105.1:22963540-22965403[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-25 1.2e-21 76.1 0.0 1 73 9 76 9 80 0.95 2 2 4.7e-06 0.018 14.7 0.0 27 75 199 256 180 258 0.87
Sequence Information
- Coding Sequence
- atgcaaatgaactcaaatatttcaattgagCGTAAGAAAGTGGACTGTCATGTTCTGCCTAAAGGTTGGCAAAGAGAAGAAGTTTTACGAAAGTCTGGAATTTCAGCAGGAAAAGTCGATGTCTATTATTACAGTCCAACTGGAAAGCGTATAGATAACAAACCACAATTAGCACGACATTTAGGAGAAGCTATAGATATAAGCagttttgattttcaaaaagGCAAGTTCGTACAACATATACCACCACCTTCTATATCGCTGCACCGCTGTATCTCTAGTGCAACATCTGCCGTCAGTAGCAGTGGAACTAGTGTAGGAGGTGTTGGTACCAGAACTGGCAGTACCACTGGTAATGCTACTGCATTACCAAAATTGAGTGGTGGTATTACAATAATACCATCATATCAAGCATCGGCCGGTCACAATTTAAAACGCAAACACAGAATGGGGCCGCAAGCAACGGCATTAAATTTGCCTTCGTTGTCTTCCACTTCAATTTCCagtcatcaaaatattttaagctcttGCGCaacgatgacgatgatgaaATCAACAAATTTGCCAATTAATCAACAACAATTAGAATTCAGTCGTGCTATGAGAACAGATGTCTCCTTGGTACCTCCTATACGGCAGACTGcatcaatatttaaacaacCCGTTACTGTAATAAGGAACCACGAAAATAGTAAGActaaaaatgatgcaaaacAAGGAGCACAGGATAAGCCAAAGCAACTATTTTGGGAAAAACGTTTAGAAAGTATGAGAGCTTGTCATGCAACCGGCGAACAATTTGATGATATTGTGTTACCCAAAACCCTTAAACCTTTGGGGCCTAATGTCCATGAACAGACTGTGATGCAATCACTAGCTACAGCTTTACATGTCCTTAATGCTCCTGTAACTGGGCAAACTGCTCCTAAAGCCGAATTTCAAAAGAATTCTActgcatttataaatacagACCAACCTCTAATGCAAAGTATTCTCATATCAGATGATGATATACGCCGGCAAGAAGATCGTGTTAATTCGGCGCGTAGAAAGCTGCAAGAAGCTTTAAAAGCTTGA
- Protein Sequence
- MQMNSNISIERKKVDCHVLPKGWQREEVLRKSGISAGKVDVYYYSPTGKRIDNKPQLARHLGEAIDISSFDFQKGKFVQHIPPPSISLHRCISSATSAVSSSGTSVGGVGTRTGSTTGNATALPKLSGGITIIPSYQASAGHNLKRKHRMGPQATALNLPSLSSTSISSHQNILSSCATMTMMKSTNLPINQQQLEFSRAMRTDVSLVPPIRQTASIFKQPVTVIRNHENSKTKNDAKQGAQDKPKQLFWEKRLESMRACHATGEQFDDIVLPKTLKPLGPNVHEQTVMQSLATALHVLNAPVTGQTAPKAEFQKNSTAFINTDQPLMQSILISDDDIRRQEDRVNSARRKLQEALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074473; iTF_01398482; iTF_01397429; iTF_00760089; iTF_01399450; iTF_00435548;
- 90% Identity
- -
- 80% Identity
- -