Gvir017556.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- Mbd2
- Assembly
- GCA_956483585.1
- Location
- OY101442.1:13732646-13734598[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-26 5.3e-22 78.4 0.0 1 73 9 76 9 80 0.95 2 2 2.2e-05 0.18 12.6 0.0 27 74 200 256 185 259 0.87
Sequence Information
- Coding Sequence
- atgcaAATGAACTCGAATATTTCAATTGAACGTAAGAAAGTAGACTGTAATTCCCTTCCAAAAGGATGGCAAAGAGAGGAAGTTTTACGAAAGTCTGGAATCTCAGCGGGAAAAGTTGATGTCTACTATTAcagTCCAACTGGAAAACGTATAGATAGCAAACCACAATTGGCACGTCATTTAGGAGAAGCTATAGATATAAGCAGTTTTGATTTccaaaaaggcaaatttatacaacatctgCCATCACCTTCTATATCACTGTACCGCTGCATATCCGCGACGACGCCTGCAGTCAGCAGTAGTGGAACTGGCTTAGGAGGTGGTGGTAGCAATACTGGCATTAGTATTGCTGGTAATGCTACTTCATTGCCAACATTGGGTGGTGGCATTACTATAATGCCATCACATCATGCATCTGCGGGCCACAATTTAAAGCGTAAACATAGAATGGGATCTCAAACAGCAGTTTTTAATTTGCCTTCGTTGTCTTCCACTTCAATTTCGAATCATCATAATCTTTTAAGTTCTTGCACAACGATGACGACGATGACATCAACAAATTTGCCACTTAAGCAGCAACAATTAGAATTCAGtcGCGCTATGCGAACAGATGTCTCAATGGTGCCGCCTATACGCCAGACTGCTTCTATATTTAAGCAGCCCGTAACTGTAATACGAAATCATGAAAACAGCAAGACAAAAAATGACACAAAACAAGGAGCACAAGATAAACCGAAGCAATTATTTTGGGAAAAACGTTTAGAGCGTATACGAGCTTGTCATGCAACCGGTGAGCAATTTGATGACATTGTATTGCCCAAGAGTCTTAAACCTTTAGGGCCTAATGTCCATGAACAGACCGTCATGCAATCACTAGCTACAGCTTTACATGTACTCAATACTCCTGTAACTGGACAAACAGCTTCTAAAACTGAATTTCAAAAAAACGCCACGGCTTTCATCAATCCTGACCAACCCCTGATGCAAGGTATACTCATATCAGATGATGATATACGGCGACAAGAAGATCGTGTTAATTCGGCAAGAAGAAAGCTACAAGAAGCTTTAAAAGCTTAA
- Protein Sequence
- MQMNSNISIERKKVDCNSLPKGWQREEVLRKSGISAGKVDVYYYSPTGKRIDSKPQLARHLGEAIDISSFDFQKGKFIQHLPSPSISLYRCISATTPAVSSSGTGLGGGGSNTGISIAGNATSLPTLGGGITIMPSHHASAGHNLKRKHRMGSQTAVFNLPSLSSTSISNHHNLLSSCTTMTTMTSTNLPLKQQQLEFSRAMRTDVSMVPPIRQTASIFKQPVTVIRNHENSKTKNDTKQGAQDKPKQLFWEKRLERIRACHATGEQFDDIVLPKSLKPLGPNVHEQTVMQSLATALHVLNTPVTGQTASKTEFQKNATAFINPDQPLMQGILISDDDIRRQEDRVNSARRKLQEALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01109335;
- 90% Identity
- iTF_01397429;
- 80% Identity
- -