Olae001484.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000584.1:55036-57399[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.31 1.2e+02 2.9 0.0 21 45 6 30 3 38 0.85 2 19 0.022 8.7 6.6 0.1 18 51 59 92 49 95 0.82 3 19 4.3 1.7e+03 -0.8 0.0 21 39 90 108 86 118 0.77 4 19 0.21 84 3.4 0.0 21 45 118 142 108 149 0.80 5 19 0.009 3.5 7.8 0.0 20 45 145 170 128 179 0.80 6 19 1.6 6.4e+02 0.6 0.1 21 52 174 205 171 207 0.85 7 19 1 4e+02 1.3 0.0 26 47 261 282 257 287 0.83 8 19 0.0038 1.5 9.0 0.6 19 45 282 308 270 316 0.82 9 19 1.9 7.3e+02 0.4 0.0 23 46 314 337 308 344 0.81 10 19 2.4 9.4e+02 0.1 0.0 21 46 340 365 336 372 0.80 11 19 4 1.6e+03 -0.7 0.0 21 44 368 391 364 394 0.80 12 19 0.0075 3 8.1 0.1 21 45 396 420 384 427 0.91 13 19 2.5 9.8e+02 0.0 0.0 22 46 425 449 419 457 0.79 14 19 0.12 47 4.2 0.0 21 45 534 558 530 565 0.88 15 19 2.7 1.1e+03 -0.1 0.0 23 46 564 587 557 595 0.80 16 19 4.1 1.6e+03 -0.7 0.0 21 44 590 613 586 616 0.79 17 19 1.5 6e+02 0.7 0.0 21 45 672 696 666 705 0.86 18 19 3.6 1.4e+03 -0.5 0.0 21 44 728 751 722 755 0.81 19 19 0.098 39 4.5 0.0 21 46 756 781 752 787 0.86
Sequence Information
- Coding Sequence
- ATGAGGATCCACACCGGAGAAAAGCCCTACAAATGTTCAATTTGCCAGACCAAGTTTTCCCAAGCGAGTTCCATGAAGGTGCACATGAGAGGCCACAAAGGAGAGAAGCCTTACAAATGCGACTTTTGCGATCTCAAGTATACGTCATCAGGCGCCAGAAAGGTTCATATGAGACGTCACACTGGAGAGAAGCCATACGAATGTTCGATTTGTAAAGCGAAATTTTTCGAATCATCTTCGTTGCTGGTCCACTTAAGATATCACAAAGGAGAGAAGCCATACAAATGTGACGTTTGTGGGGCTAAGTTCACCACATCATCTGAACATACGATACATATGAGATATCACAGTGGAGAAAAGCCCTACAAATGCGACATTTGTAAAGCCAAGTTTGTCGTAAAGCCCTCTTTGAGGGATCATATGAGAACTCATACAGGAGAAAAGCCATACAAATGTAAACTTTGTGATGGAAAGTTTGCTCAAGGAAGCAATCTGAGGCAGCATATGCTTACCCACACTGGAGAGAAGCCACACGGATGTCAACTTTGCGAGTTCAAGTCCTCAAGCGCTGGCCAATTGAGGGCTCACATGAGACTTCACACCGGAGAGAAGCCATACAAATGTGAGCTTTGCGAGAAAAAGTTCGTTTGGAAATCTTGTCTTAGAGTACACATGAAAGCTCATACTGATCCTTACAAATGTGAGCTTTGTGATTCCGAATTCTTAAAGGCGAACCAACTTAAGTTTCATATGAATACTCACACCGGAAAAAATCTTTCGAAATGTGACCTTTGCGATGCCAACTTCTTACATCCGACATCTTTGAGGCGTCACATGAATACTCATACAGGAGAAAAGCCTTGTAAATGTGAGCTATGCGACGCCAGGTTCCCTCATTCGAAATCTTTGAAGCGTCACATGAAAAGTCACAGCGGGTGGAAACCTTACAAATGTGACATTTGTGCTGAAAAGTTCTTCCAGACATCTAAACTTAAGGTTCACATGAAAACACACACAGGAGAGAAGCCTTACAAATGTGATGTTTGTGAAGCCAAATTCTTATACCCGAGCCAACTGAAGATGCACATGAATACTCATACAGGAGAAAAGCCTTATAAATGTGATGTTTGTGAAGCTAAATTCTTATACCCGACCCAACTGAAGATGCACATGAATACTCATACAGGAGAAAAGCCTTATAAATGTGAGCTATGCGATGCCAGGTTCGCGCATTCGAAATCTTTAAAGCGTCACATGAAAAGTCACAGCGGAAGAAGGCCTTACAAATGTGACATTTGTGAGGAAAAGTTCTTCCAGAAAGCTAAACTTAAGGTTCACATGAAAACACACACCGGAGAGAAGCCATACAAATGTGAGCTTTGCGAGAAAAAGTTCGTTTGGAAATCTTTTCTTAGCGTACACATGAAAGCTCATACTGAGCCTTACAAATGTGAGCTTTGTGATTCCGAATTCTTAAAGGCGAACCAACTTAAGTTTCATATGAATACTCACACCGGAAAAAATCGTTCTAAATGTGACCTTTGCGATGCCAACTTCTTATACCCGAGCCAACTGAAGATGCACATTAATACTCATACAGGAGAAAAGCCTTATAAATGTGAGCTATGCGATGACAGGTTCTCGCATTCGCAATCTTTGAAGCGTCACATGAAAAGTCACAGCGGGTGGAAGCCTTACAAATGTGACATTTGTGCTGAAAAGTTCTTCCAGAAAGCTAAACTTAAGGTTCACATGAAAACACACACCGGAGAGAAGCCTTACAAATGTGATGTTTGTGAAGCCAAATTCTTATACCCGAGCCAACTGAAGATGCACATGAATACTCATACTGAGCCTTACAAATGTGAGCTTTGTGATTCCGAATTCTTAAAGGCGAACCAACTTAAGTTTCATATGAATACTCACACCGGAAAAAATCTTTCTAAATGTGACCTTTGCGATGCCAACTTCTTATACCCGAGCCAACTGAAGATGCACATGAATACTCATACAGGAGAAAAGCCTTATAAATGTGAGCTATGCGATGACAGGTTCTCGCATTCGCAATCTTTGAAGAGTCACATGAAAGGTCACAGCGGAGGGAAGCCTTACAAATGTGACATTTGTGAGGAAAAGTTCTTCCAGAAAGCTAAACTTAAGGTTCACATGAAAACACACACAGGAGAGAAACCTTACAAATGTGATGTTTGTGAAGCCAAATTCTTATACCCGACCCAACTTAAGATGCACATGAATACTCATACAGGAGAAAAGCCTTATAAATGTGAGCTATGCGATGACAGGTTCTCGCATTCGCAATCTTTGAAGCGTCACATGAAAAGTCACAGCGGAGGGAAGCCATAG
- Protein Sequence
- MRIHTGEKPYKCSICQTKFSQASSMKVHMRGHKGEKPYKCDFCDLKYTSSGARKVHMRRHTGEKPYECSICKAKFFESSSLLVHLRYHKGEKPYKCDVCGAKFTTSSEHTIHMRYHSGEKPYKCDICKAKFVVKPSLRDHMRTHTGEKPYKCKLCDGKFAQGSNLRQHMLTHTGEKPHGCQLCEFKSSSAGQLRAHMRLHTGEKPYKCELCEKKFVWKSCLRVHMKAHTDPYKCELCDSEFLKANQLKFHMNTHTGKNLSKCDLCDANFLHPTSLRRHMNTHTGEKPCKCELCDARFPHSKSLKRHMKSHSGWKPYKCDICAEKFFQTSKLKVHMKTHTGEKPYKCDVCEAKFLYPSQLKMHMNTHTGEKPYKCDVCEAKFLYPTQLKMHMNTHTGEKPYKCELCDARFAHSKSLKRHMKSHSGRRPYKCDICEEKFFQKAKLKVHMKTHTGEKPYKCELCEKKFVWKSFLSVHMKAHTEPYKCELCDSEFLKANQLKFHMNTHTGKNRSKCDLCDANFLYPSQLKMHINTHTGEKPYKCELCDDRFSHSQSLKRHMKSHSGWKPYKCDICAEKFFQKAKLKVHMKTHTGEKPYKCDVCEAKFLYPSQLKMHMNTHTEPYKCELCDSEFLKANQLKFHMNTHTGKNLSKCDLCDANFLYPSQLKMHMNTHTGEKPYKCELCDDRFSHSQSLKSHMKGHSGGKPYKCDICEEKFFQKAKLKVHMKTHTGEKPYKCDVCEAKFLYPTQLKMHMNTHTGEKPYKCELCDDRFSHSQSLKRHMKSHSGGKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108663;
- 90% Identity
- iTF_01108663;
- 80% Identity
- iTF_01108663;