Olae001484.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orius laevigatus
Gene Symbol
-
Assembly
GCA_018703685.1
Location
JAGWEN010000584.1:55036-57399[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 1.2e-06 7e-05 23.1 1.1 1 23 10 32 10 32 0.98
2 28 0.00013 0.0079 16.6 1.5 1 23 38 60 38 60 0.99
3 28 0.00022 0.013 15.9 0.7 1 23 66 88 66 88 0.98
4 28 7.2e-05 0.0044 17.4 2.1 1 23 94 116 94 116 0.99
5 28 4.8e-06 0.00029 21.1 0.5 1 23 122 144 122 144 0.99
6 28 7.4e-06 0.00045 20.5 0.7 1 23 150 172 150 172 0.99
7 28 0.0023 0.14 12.7 0.3 3 23 180 200 179 200 0.98
8 28 0.00041 0.025 15.1 2.4 1 23 206 228 206 228 0.98
9 28 0.18 11 6.8 1.1 1 23 232 254 232 254 0.98
10 28 0.00068 0.041 14.4 1.7 2 23 261 282 260 282 0.98
11 28 6.3e-05 0.0038 17.6 5.4 2 23 289 310 288 310 0.96
12 28 2e-05 0.0012 19.2 1.8 1 23 316 338 316 338 0.99
13 28 0.00013 0.0081 16.6 0.5 1 23 344 366 344 366 0.99
14 28 0.00054 0.032 14.7 0.6 1 23 372 394 372 394 0.99
15 28 2.3e-06 0.00014 22.1 3.1 1 23 400 422 400 422 0.99
16 28 2.3e-06 0.00014 22.1 1.6 1 23 428 450 428 450 0.99
17 28 0.00073 0.044 14.3 0.8 1 23 456 478 456 478 0.98
18 28 0.18 11 6.8 1.1 1 23 482 504 482 504 0.98
19 28 0.0016 0.097 13.2 0.3 2 23 511 532 510 532 0.98
20 28 3e-05 0.0018 18.6 4.1 1 23 538 560 538 560 0.99
21 28 9.3e-06 0.00057 20.2 1.3 1 23 566 588 566 588 0.99
22 28 0.00013 0.0081 16.6 0.5 1 23 594 616 594 616 0.99
23 28 0.18 11 6.8 1.1 1 23 620 642 620 642 0.98
24 28 0.00071 0.043 14.3 0.4 2 23 649 670 648 670 0.98
25 28 0.00013 0.0081 16.6 2.9 1 23 676 698 676 698 0.98
26 28 2.3e-06 0.00014 22.1 1.6 1 23 704 726 704 726 0.99
27 28 0.00054 0.032 14.7 0.6 1 23 732 754 732 754 0.99
28 28 3e-05 0.0018 18.6 4.1 1 23 760 782 760 782 0.99

Sequence Information

Coding Sequence
ATGAGGATCCACACCGGAGAAAAGCCCTACAAATGTTCAATTTGCCAGACCAAGTTTTCCCAAGCGAGTTCCATGAAGGTGCACATGAGAGGCCACAAAGGAGAGAAGCCTTACAAATGCGACTTTTGCGATCTCAAGTATACGTCATCAGGCGCCAGAAAGGTTCATATGAGACGTCACACTGGAGAGAAGCCATACGAATGTTCGATTTGTAAAGCGAAATTTTTCGAATCATCTTCGTTGCTGGTCCACTTAAGATATCACAAAGGAGAGAAGCCATACAAATGTGACGTTTGTGGGGCTAAGTTCACCACATCATCTGAACATACGATACATATGAGATATCACAGTGGAGAAAAGCCCTACAAATGCGACATTTGTAAAGCCAAGTTTGTCGTAAAGCCCTCTTTGAGGGATCATATGAGAACTCATACAGGAGAAAAGCCATACAAATGTAAACTTTGTGATGGAAAGTTTGCTCAAGGAAGCAATCTGAGGCAGCATATGCTTACCCACACTGGAGAGAAGCCACACGGATGTCAACTTTGCGAGTTCAAGTCCTCAAGCGCTGGCCAATTGAGGGCTCACATGAGACTTCACACCGGAGAGAAGCCATACAAATGTGAGCTTTGCGAGAAAAAGTTCGTTTGGAAATCTTGTCTTAGAGTACACATGAAAGCTCATACTGATCCTTACAAATGTGAGCTTTGTGATTCCGAATTCTTAAAGGCGAACCAACTTAAGTTTCATATGAATACTCACACCGGAAAAAATCTTTCGAAATGTGACCTTTGCGATGCCAACTTCTTACATCCGACATCTTTGAGGCGTCACATGAATACTCATACAGGAGAAAAGCCTTGTAAATGTGAGCTATGCGACGCCAGGTTCCCTCATTCGAAATCTTTGAAGCGTCACATGAAAAGTCACAGCGGGTGGAAACCTTACAAATGTGACATTTGTGCTGAAAAGTTCTTCCAGACATCTAAACTTAAGGTTCACATGAAAACACACACAGGAGAGAAGCCTTACAAATGTGATGTTTGTGAAGCCAAATTCTTATACCCGAGCCAACTGAAGATGCACATGAATACTCATACAGGAGAAAAGCCTTATAAATGTGATGTTTGTGAAGCTAAATTCTTATACCCGACCCAACTGAAGATGCACATGAATACTCATACAGGAGAAAAGCCTTATAAATGTGAGCTATGCGATGCCAGGTTCGCGCATTCGAAATCTTTAAAGCGTCACATGAAAAGTCACAGCGGAAGAAGGCCTTACAAATGTGACATTTGTGAGGAAAAGTTCTTCCAGAAAGCTAAACTTAAGGTTCACATGAAAACACACACCGGAGAGAAGCCATACAAATGTGAGCTTTGCGAGAAAAAGTTCGTTTGGAAATCTTTTCTTAGCGTACACATGAAAGCTCATACTGAGCCTTACAAATGTGAGCTTTGTGATTCCGAATTCTTAAAGGCGAACCAACTTAAGTTTCATATGAATACTCACACCGGAAAAAATCGTTCTAAATGTGACCTTTGCGATGCCAACTTCTTATACCCGAGCCAACTGAAGATGCACATTAATACTCATACAGGAGAAAAGCCTTATAAATGTGAGCTATGCGATGACAGGTTCTCGCATTCGCAATCTTTGAAGCGTCACATGAAAAGTCACAGCGGGTGGAAGCCTTACAAATGTGACATTTGTGCTGAAAAGTTCTTCCAGAAAGCTAAACTTAAGGTTCACATGAAAACACACACCGGAGAGAAGCCTTACAAATGTGATGTTTGTGAAGCCAAATTCTTATACCCGAGCCAACTGAAGATGCACATGAATACTCATACTGAGCCTTACAAATGTGAGCTTTGTGATTCCGAATTCTTAAAGGCGAACCAACTTAAGTTTCATATGAATACTCACACCGGAAAAAATCTTTCTAAATGTGACCTTTGCGATGCCAACTTCTTATACCCGAGCCAACTGAAGATGCACATGAATACTCATACAGGAGAAAAGCCTTATAAATGTGAGCTATGCGATGACAGGTTCTCGCATTCGCAATCTTTGAAGAGTCACATGAAAGGTCACAGCGGAGGGAAGCCTTACAAATGTGACATTTGTGAGGAAAAGTTCTTCCAGAAAGCTAAACTTAAGGTTCACATGAAAACACACACAGGAGAGAAACCTTACAAATGTGATGTTTGTGAAGCCAAATTCTTATACCCGACCCAACTTAAGATGCACATGAATACTCATACAGGAGAAAAGCCTTATAAATGTGAGCTATGCGATGACAGGTTCTCGCATTCGCAATCTTTGAAGCGTCACATGAAAAGTCACAGCGGAGGGAAGCCATAG
Protein Sequence
MRIHTGEKPYKCSICQTKFSQASSMKVHMRGHKGEKPYKCDFCDLKYTSSGARKVHMRRHTGEKPYECSICKAKFFESSSLLVHLRYHKGEKPYKCDVCGAKFTTSSEHTIHMRYHSGEKPYKCDICKAKFVVKPSLRDHMRTHTGEKPYKCKLCDGKFAQGSNLRQHMLTHTGEKPHGCQLCEFKSSSAGQLRAHMRLHTGEKPYKCELCEKKFVWKSCLRVHMKAHTDPYKCELCDSEFLKANQLKFHMNTHTGKNLSKCDLCDANFLHPTSLRRHMNTHTGEKPCKCELCDARFPHSKSLKRHMKSHSGWKPYKCDICAEKFFQTSKLKVHMKTHTGEKPYKCDVCEAKFLYPSQLKMHMNTHTGEKPYKCDVCEAKFLYPTQLKMHMNTHTGEKPYKCELCDARFAHSKSLKRHMKSHSGRRPYKCDICEEKFFQKAKLKVHMKTHTGEKPYKCELCEKKFVWKSFLSVHMKAHTEPYKCELCDSEFLKANQLKFHMNTHTGKNRSKCDLCDANFLYPSQLKMHINTHTGEKPYKCELCDDRFSHSQSLKRHMKSHSGWKPYKCDICAEKFFQKAKLKVHMKTHTGEKPYKCDVCEAKFLYPSQLKMHMNTHTEPYKCELCDSEFLKANQLKFHMNTHTGKNLSKCDLCDANFLYPSQLKMHMNTHTGEKPYKCELCDDRFSHSQSLKSHMKGHSGGKPYKCDICEEKFFQKAKLKVHMKTHTGEKPYKCDVCEAKFLYPTQLKMHMNTHTGEKPYKCELCDDRFSHSQSLKRHMKSHSGGKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01108991;
90% Identity
iTF_01108991;
80% Identity
iTF_01108991;