Basic Information

Insect: Orius laevigatus
Gene Symbol: -
Assembly: GCA_018703685.1
Location: JAGWEN010000539.1:38267-40210[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7 2.7e+03 -1.4 0.0 19 45 138 164 130 170 0.76

2 18 0.064 25 5.1 0.6 22 48 169 195 155 197 0.86

3 18 0.00038 0.15 12.2 0.4 16 45 192 221 190 224 0.90

4 18 0.051 20 5.4 1.0 21 47 225 251 220 257 0.84

5 18 0.84 3.3e+02 1.5 0.1 21 43 253 275 249 280 0.89

6 18 0.011 4.3 7.6 0.1 21 48 281 308 274 312 0.85

7 18 0.13 53 4.1 0.0 21 48 309 336 305 340 0.86

8 18 0.02 7.9 6.7 0.1 21 43 337 359 335 364 0.92

9 18 0.011 4.5 7.5 0.0 21 43 365 387 360 396 0.87

10 18 0.53 2.1e+02 2.2 0.1 21 43 393 415 388 417 0.82

11 18 0.21 83 3.4 0.1 14 44 413 444 410 452 0.73

12 18 0.034 13 6.0 0.0 22 43 450 471 445 475 0.92

13 18 0.063 25 5.1 0.0 21 43 477 499 472 504 0.89

14 18 0.4 1.6e+02 2.6 0.1 16 44 499 528 497 536 0.71

15 18 0.2 81 3.5 0.1 21 44 533 556 524 560 0.87

16 18 0.00058 0.23 11.6 0.1 20 48 560 588 553 592 0.80

17 18 0.26 1e+02 3.1 0.0 21 43 589 611 585 615 0.92

18 18 0.0044 1.7 8.8 0.0 21 50 617 646 612 647 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7	2.7e+03	-1.4	0.0	19	45	138	164	130	170	0.76
2	18	0.064	25	5.1	0.6	22	48	169	195	155	197	0.86
3	18	0.00038	0.15	12.2	0.4	16	45	192	221	190	224	0.90
4	18	0.051	20	5.4	1.0	21	47	225	251	220	257	0.84
5	18	0.84	3.3e+02	1.5	0.1	21	43	253	275	249	280	0.89
6	18	0.011	4.3	7.6	0.1	21	48	281	308	274	312	0.85
7	18	0.13	53	4.1	0.0	21	48	309	336	305	340	0.86
8	18	0.02	7.9	6.7	0.1	21	43	337	359	335	364	0.92
9	18	0.011	4.5	7.5	0.0	21	43	365	387	360	396	0.87
10	18	0.53	2.1e+02	2.2	0.1	21	43	393	415	388	417	0.82
11	18	0.21	83	3.4	0.1	14	44	413	444	410	452	0.73
12	18	0.034	13	6.0	0.0	22	43	450	471	445	475	0.92
13	18	0.063	25	5.1	0.0	21	43	477	499	472	504	0.89
14	18	0.4	1.6e+02	2.6	0.1	16	44	499	528	497	536	0.71
15	18	0.2	81	3.5	0.1	21	44	533	556	524	560	0.87
16	18	0.00058	0.23	11.6	0.1	20	48	560	588	553	592	0.80
17	18	0.26	1e+02	3.1	0.0	21	43	589	611	585	615	0.92
18	18	0.0044	1.7	8.8	0.0	21	50	617	646	612	647	0.90

Sequence Information

Coding Sequence: ATGAGTCTAATCAAACTGGAAGGTGTGGAGGACGAAGACTACTTTGAGGAGGAAGAACCTTTCTTTGAGGAAGAAGAAAACCTGAAGAAAGAAGACGACTTTATCGACATAAAGGAAGAACCCCTCTTCACTGAAGACATAAAGAAAGAACCTTTCTGTATCCAAGAAGTGAAAGAAGAACCTTTCTTCAATGAAGATGATGTGGTTGACATAGGGGAAGAACATTTCTCCACCAAAGAAGACATAAAGAAAGAAGAACCTTTCTTAGTTAAAGATCTGGAGGAAAAAAGAAATGCAGAATCTGAAGAGATCGGACTGGAAAGTGCTGTTGATTTTCAAACAGTGAACATGAAAGAAATCTTCCTTTTGGGATTCAACATGGAAGAAGGACCTTCAACCAGCAACAGCAGAAATGAAATTGATGGATTCTATGAATGTGCATTATGCTGGTGTGAGTTTTTTAATCCCTCTAGTTTGATGAGGCATTTAAAAAGCCACAGTAAAGAGAAGTGTTACAAATGCAATTTGTGTAAGGCCCAATTCTTTAACCCCAGTGAAATGAAGAGGCACACTAGATTACGTCACACTGGAGAAAGGCCCTTCAAATGTGGGATTTGTTGGGCCCAGTTTTCTGCGAGTAGCCAGCTGAAGAGACATACTAGAATCCACACTGGAGAAAGGCCTCACAAATGTGAAATTTGTAATGCCAGGTTTTCCAGGGTGAGCAGCCTGAACAGACATATGAGAACTCACACCAGAGAAAAGCCTTACAAATGTGAGCTTTGTGAGGGCACGTTCGCCGATCCAAACTATCTGAGGCGTCATAAGAGGACTCATACTAACGAAAAGCCTTACAAATGTAAACAGTGTGATGCCAGCTTCTATGATTCATTTTCTTTGAAGAGGCATTTGAGAGTTCACACTGGAGAAAAGCCTTACGAATGTAAACATTGTGATGCCAGCTTCTCTGTATCATATGCTTTGAAGAAGCATTTGAGAGTTCACACCGGAGAAAAACCTTACAAATGTGAACTTTGTGAGGCTAAGTTCGCCGATTCAAGCTATTTGAGGCGTCATAAAAGGACTCATACTAACGAAAAGCCTTACAAATGTGAGAATTGTGATGCTAAGTTTGCCGATTCAAACAATCTGAAGCGACATAAGTGGACTCATACTAACGAAAAGCCTTACAAATGTGAGATTTGTAATGCCACATTCACTAATTTAACTTCTTTGAAGAACCATTCAAGAACCCACACAAAAGAAAGGCCTTACAAATGTGAGATTTGTAAGGCCACGTTCACTGTGTTAGGGGGTTTAAAGGTTCATATGAGGATTCACCCTGGCGAAAAGCCTTACAAATGTGAGATTTGTGAGGCCAAGTTTTCCCAATTTGGCAGTCTGAAGCGTCACAATAGGACTCACACTGGAGAAAAGCCTTTCAAATGTGAGATTTGTAATGCCAACTTCTCTAATTCAACTCATTTGAAGAACCATTCAAGAACCCACACAGGAGAAAGGCCTTTCAAATGTGAGATTTGTAAGGCCAAGTTTTCCGTGATGAGCATCCTGAAGAGTCATATGAGAACTCACACCGGAGAAAAACCTCACAAATGTAAACAGTGTGATGCCAGCTTTTCCGCGTCATTTGCTTTGAAGAGGCATTCCAGAGTTCACACTGGAGAGAAGCCTTACGAATGTGATATTTGTAAGGCCAAGTTCGCCGAGTTGAGAAATTTAAAGAATCATATGAGAATTCATACCGGAGAAAAACCTTACGAATGTGAAGTTTGTGGGGCCAAGTTCGGCGATTTAAGCAATCTGAGGCATCATAGGTGGACTCATACTGACGAAAAGCCCTACAAATGTGACATTTGTGAGGCAGAGTTTGCTGCTTCAAGATCGAAGAAGAAGCATATGAAGAAAACTCATTCTGCAGAATAG
Protein Sequence: MSLIKLEGVEDEDYFEEEEPFFEEEENLKKEDDFIDIKEEPLFTEDIKKEPFCIQEVKEEPFFNEDDVVDIGEEHFSTKEDIKKEEPFLVKDLEEKRNAESEEIGLESAVDFQTVNMKEIFLLGFNMEEGPSTSNSRNEIDGFYECALCWCEFFNPSSLMRHLKSHSKEKCYKCNLCKAQFFNPSEMKRHTRLRHTGERPFKCGICWAQFSASSQLKRHTRIHTGERPHKCEICNARFSRVSSLNRHMRTHTREKPYKCELCEGTFADPNYLRRHKRTHTNEKPYKCKQCDASFYDSFSLKRHLRVHTGEKPYECKHCDASFSVSYALKKHLRVHTGEKPYKCELCEAKFADSSYLRRHKRTHTNEKPYKCENCDAKFADSNNLKRHKWTHTNEKPYKCEICNATFTNLTSLKNHSRTHTKERPYKCEICKATFTVLGGLKVHMRIHPGEKPYKCEICEAKFSQFGSLKRHNRTHTGEKPFKCEICNANFSNSTHLKNHSRTHTGERPFKCEICKAKFSVMSILKSHMRTHTGEKPHKCKQCDASFSASFALKRHSRVHTGEKPYECDICKAKFAELRNLKNHMRIHTGEKPYECEVCGAKFGDLSNLRHHRWTHTDEKPYKCDICEAEFAASRSKKKHMKKTHSAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01108666;
90% Identity: iTF_01108666;
80% Identity: iTF_01108666;