Olae002845.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000539.1:38267-40210[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00013 0.0081 16.6 1.3 1 23 144 166 144 166 0.98 2 18 0.00022 0.013 15.9 2.1 1 23 172 195 172 195 0.97 3 18 1.6e-05 0.00094 19.5 0.4 1 23 201 223 201 223 0.99 4 18 2.4e-07 1.4e-05 25.2 2.7 1 23 229 251 229 251 0.98 5 18 1.2e-05 0.00075 19.8 0.7 1 23 257 279 257 279 0.99 6 18 1.1e-06 6.6e-05 23.2 2.1 1 23 285 307 285 307 0.99 7 18 5.9e-07 3.6e-05 24.0 1.6 1 23 313 335 313 335 0.99 8 18 2.2e-06 0.00013 22.2 1.4 1 23 341 363 341 363 0.99 9 18 5.9e-05 0.0036 17.7 1.0 1 20 369 388 369 391 0.93 10 18 2.3e-06 0.00014 22.1 1.5 1 23 397 419 397 419 0.99 11 18 3.9e-06 0.00023 21.4 0.1 1 23 425 447 425 447 0.99 12 18 9.8e-06 0.00059 20.2 1.5 1 23 453 475 453 475 0.99 13 18 6.6e-06 0.0004 20.7 3.6 1 23 481 503 481 503 0.99 14 18 0.00019 0.012 16.1 1.0 1 23 509 531 509 531 0.99 15 18 0.00014 0.0086 16.5 2.3 1 23 537 559 537 559 0.98 16 18 5.2e-06 0.00031 21.0 0.3 1 23 565 587 565 587 0.99 17 18 0.0001 0.0061 17.0 0.5 1 20 593 612 593 615 0.92 18 18 0.0025 0.15 12.6 0.9 1 23 621 644 621 644 0.98
Sequence Information
- Coding Sequence
- ATGAGTCTAATCAAACTGGAAGGTGTGGAGGACGAAGACTACTTTGAGGAGGAAGAACCTTTCTTTGAGGAAGAAGAAAACCTGAAGAAAGAAGACGACTTTATCGACATAAAGGAAGAACCCCTCTTCACTGAAGACATAAAGAAAGAACCTTTCTGTATCCAAGAAGTGAAAGAAGAACCTTTCTTCAATGAAGATGATGTGGTTGACATAGGGGAAGAACATTTCTCCACCAAAGAAGACATAAAGAAAGAAGAACCTTTCTTAGTTAAAGATCTGGAGGAAAAAAGAAATGCAGAATCTGAAGAGATCGGACTGGAAAGTGCTGTTGATTTTCAAACAGTGAACATGAAAGAAATCTTCCTTTTGGGATTCAACATGGAAGAAGGACCTTCAACCAGCAACAGCAGAAATGAAATTGATGGATTCTATGAATGTGCATTATGCTGGTGTGAGTTTTTTAATCCCTCTAGTTTGATGAGGCATTTAAAAAGCCACAGTAAAGAGAAGTGTTACAAATGCAATTTGTGTAAGGCCCAATTCTTTAACCCCAGTGAAATGAAGAGGCACACTAGATTACGTCACACTGGAGAAAGGCCCTTCAAATGTGGGATTTGTTGGGCCCAGTTTTCTGCGAGTAGCCAGCTGAAGAGACATACTAGAATCCACACTGGAGAAAGGCCTCACAAATGTGAAATTTGTAATGCCAGGTTTTCCAGGGTGAGCAGCCTGAACAGACATATGAGAACTCACACCAGAGAAAAGCCTTACAAATGTGAGCTTTGTGAGGGCACGTTCGCCGATCCAAACTATCTGAGGCGTCATAAGAGGACTCATACTAACGAAAAGCCTTACAAATGTAAACAGTGTGATGCCAGCTTCTATGATTCATTTTCTTTGAAGAGGCATTTGAGAGTTCACACTGGAGAAAAGCCTTACGAATGTAAACATTGTGATGCCAGCTTCTCTGTATCATATGCTTTGAAGAAGCATTTGAGAGTTCACACCGGAGAAAAACCTTACAAATGTGAACTTTGTGAGGCTAAGTTCGCCGATTCAAGCTATTTGAGGCGTCATAAAAGGACTCATACTAACGAAAAGCCTTACAAATGTGAGAATTGTGATGCTAAGTTTGCCGATTCAAACAATCTGAAGCGACATAAGTGGACTCATACTAACGAAAAGCCTTACAAATGTGAGATTTGTAATGCCACATTCACTAATTTAACTTCTTTGAAGAACCATTCAAGAACCCACACAAAAGAAAGGCCTTACAAATGTGAGATTTGTAAGGCCACGTTCACTGTGTTAGGGGGTTTAAAGGTTCATATGAGGATTCACCCTGGCGAAAAGCCTTACAAATGTGAGATTTGTGAGGCCAAGTTTTCCCAATTTGGCAGTCTGAAGCGTCACAATAGGACTCACACTGGAGAAAAGCCTTTCAAATGTGAGATTTGTAATGCCAACTTCTCTAATTCAACTCATTTGAAGAACCATTCAAGAACCCACACAGGAGAAAGGCCTTTCAAATGTGAGATTTGTAAGGCCAAGTTTTCCGTGATGAGCATCCTGAAGAGTCATATGAGAACTCACACCGGAGAAAAACCTCACAAATGTAAACAGTGTGATGCCAGCTTTTCCGCGTCATTTGCTTTGAAGAGGCATTCCAGAGTTCACACTGGAGAGAAGCCTTACGAATGTGATATTTGTAAGGCCAAGTTCGCCGAGTTGAGAAATTTAAAGAATCATATGAGAATTCATACCGGAGAAAAACCTTACGAATGTGAAGTTTGTGGGGCCAAGTTCGGCGATTTAAGCAATCTGAGGCATCATAGGTGGACTCATACTGACGAAAAGCCCTACAAATGTGACATTTGTGAGGCAGAGTTTGCTGCTTCAAGATCGAAGAAGAAGCATATGAAGAAAACTCATTCTGCAGAATAG
- Protein Sequence
- MSLIKLEGVEDEDYFEEEEPFFEEEENLKKEDDFIDIKEEPLFTEDIKKEPFCIQEVKEEPFFNEDDVVDIGEEHFSTKEDIKKEEPFLVKDLEEKRNAESEEIGLESAVDFQTVNMKEIFLLGFNMEEGPSTSNSRNEIDGFYECALCWCEFFNPSSLMRHLKSHSKEKCYKCNLCKAQFFNPSEMKRHTRLRHTGERPFKCGICWAQFSASSQLKRHTRIHTGERPHKCEICNARFSRVSSLNRHMRTHTREKPYKCELCEGTFADPNYLRRHKRTHTNEKPYKCKQCDASFYDSFSLKRHLRVHTGEKPYECKHCDASFSVSYALKKHLRVHTGEKPYKCELCEAKFADSSYLRRHKRTHTNEKPYKCENCDAKFADSNNLKRHKWTHTNEKPYKCEICNATFTNLTSLKNHSRTHTKERPYKCEICKATFTVLGGLKVHMRIHPGEKPYKCEICEAKFSQFGSLKRHNRTHTGEKPFKCEICNANFSNSTHLKNHSRTHTGERPFKCEICKAKFSVMSILKSHMRTHTGEKPHKCKQCDASFSASFALKRHSRVHTGEKPYECDICKAKFAELRNLKNHMRIHTGEKPYECEVCGAKFGDLSNLRHHRWTHTDEKPYKCDICEAEFAASRSKKKHMKKTHSAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108978;
- 90% Identity
- iTF_01108978;
- 80% Identity
- iTF_01108978;