Basic Information

Insect: Orius laevigatus
Gene Symbol: -
Assembly: GCA_018703685.1
Location: JAGWEN010000692.1:33673-35319[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0024 0.94 9.7 0.0 20 46 16 42 9 49 0.85

2 17 0.06 24 5.2 0.1 21 44 45 68 41 77 0.88

3 17 0.0071 2.8 8.2 0.0 21 46 101 126 94 132 0.84

4 17 0.49 1.9e+02 2.3 0.0 21 43 129 151 125 156 0.90

5 17 0.00069 0.27 11.4 0.0 20 47 156 183 143 189 0.81

6 17 0.52 2e+02 2.2 0.0 21 43 185 207 182 212 0.90

7 17 0.089 35 4.6 0.0 21 44 213 236 208 242 0.88

8 17 0.46 1.8e+02 2.3 0.1 22 44 242 264 237 269 0.84

9 17 0.0063 2.5 8.3 0.0 21 44 269 292 265 296 0.91

10 17 0.0051 2 8.6 0.1 21 44 297 320 292 329 0.88

11 17 0.0061 2.4 8.4 0.0 21 47 353 379 339 386 0.85

12 17 3.4 1.3e+03 -0.4 0.0 23 43 383 403 379 407 0.89

13 17 0.0062 2.5 8.3 0.0 20 47 408 435 396 441 0.81

14 17 0.47 1.8e+02 2.3 0.0 21 43 437 459 432 464 0.90

15 17 0.071 28 5.0 0.0 21 44 465 488 457 493 0.85

16 17 0.022 8.7 6.6 0.0 22 46 494 518 489 524 0.81

17 17 0.21 82 3.5 0.0 21 43 521 543 517 547 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0024	0.94	9.7	0.0	20	46	16	42	9	49	0.85
2	17	0.06	24	5.2	0.1	21	44	45	68	41	77	0.88
3	17	0.0071	2.8	8.2	0.0	21	46	101	126	94	132	0.84
4	17	0.49	1.9e+02	2.3	0.0	21	43	129	151	125	156	0.90
5	17	0.00069	0.27	11.4	0.0	20	47	156	183	143	189	0.81
6	17	0.52	2e+02	2.2	0.0	21	43	185	207	182	212	0.90
7	17	0.089	35	4.6	0.0	21	44	213	236	208	242	0.88
8	17	0.46	1.8e+02	2.3	0.1	22	44	242	264	237	269	0.84
9	17	0.0063	2.5	8.3	0.0	21	44	269	292	265	296	0.91
10	17	0.0051	2	8.6	0.1	21	44	297	320	292	329	0.88
11	17	0.0061	2.4	8.4	0.0	21	47	353	379	339	386	0.85
12	17	3.4	1.3e+03	-0.4	0.0	23	43	383	403	379	407	0.89
13	17	0.0062	2.5	8.3	0.0	20	47	408	435	396	441	0.81
14	17	0.47	1.8e+02	2.3	0.0	21	43	437	459	432	464	0.90
15	17	0.071	28	5.0	0.0	21	44	465	488	457	493	0.85
16	17	0.022	8.7	6.6	0.0	22	46	494	518	489	524	0.81
17	17	0.21	82	3.5	0.0	21	43	521	543	517	547	0.87

Sequence Information

Coding Sequence: ATGTTTGCGTATTCAAGCACTTTAAGAAGCCACATTTCTGCTCATACTGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCATGTTTGCGTATTCAAGCACTTTGAGAAGCCACATTTCTGCTCATACTGGAGAGAAGCCTTATAAATGTGAAATCTGTGATGACATGTTTGCGTGTTCAAGCCGTTTAAAAAGGCATAAATGGATCCACACAGGTGAGAGGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGATAACGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACCGCGTCAAGCGATTTGAAAAAGCATAATAGGATCCACACAGGTGAGAAGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGAAAAGGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATATGCGAAGCTGCATTCACCGGGTCAAGCAATTTGAAAAAGCATAATAGGATCCACACAGGTGAGAAGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGAAAAGGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCCATGTTTGCGTATTTAAGCACTTTGAGAAGCCACATTTCTGCTCATACTGGAGAGAGGCGTTATAAATGTGATATATGCGATGCTACATTCGCCGAGAAACGCCATTTGACAAAGCATAATAGGATCCACACTGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCATGTTTGCGTATTCAAGCACTTTGAGAAGCCACATTTCTGCTCATACTGGAGAGAAGCCTTATAAATGTGAAATCTGTGATGCCATGTTTGCGTGTTCAAGCCGTTTAAAAAGGCATAAATGGATCCACACAGGTGAGAGGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAATGCCATTTGATAACGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACCGCGTCAAGCGATTTGAAAAAGCATAATAGGATCCACACAGGTTTGAAGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGAAAAGGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATATGCGAAGCTGCATTCACCGGGTCAAGCGATTTGAAAAAGCATAATAGGATCCACACAGGTGAGAAGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGAAAAGGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCCATGTTTGCGTATTTAAGCACTTTGAGAAGCCACATTTCTGCTCATACTGGAGAGAGGCGTTATAAATGTGATATATGCGATGCTACATTCGCCGAGAAACGCAATTTGACAAAGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCAACATTCGCCACGAAAGGCCATTTGACAAGGCATAATAGGATCCACACATGA
Protein Sequence: MFAYSSTLRSHISAHTGEKPYKCDICDAMFAYSSTLRSHISAHTGEKPYKCEICDDMFACSSRLKRHKWIHTGERPYKCDFCEAAFTEKGHLITHKRTHTGEKPYKCDICEAAFTASSDLKKHNRIHTGEKPYKCDFCEAAFTEKGHLKRHKRTHTGEKPYKCDICEAAFTGSSNLKKHNRIHTGEKPYKCDFCEAAFTEKGHLKRHKRTHTGEKPYKCDICDAMFAYLSTLRSHISAHTGERRYKCDICDATFAEKRHLTKHNRIHTGEKPYKCDICDAMFAYSSTLRSHISAHTGEKPYKCEICDAMFACSSRLKRHKWIHTGERPYKCDFCEAAFTEKCHLITHKRTHTGEKPYKCDICEAAFTASSDLKKHNRIHTGLKPYKCDFCEAAFTEKGHLKRHKRTHTGEKPYKCDICEAAFTGSSDLKKHNRIHTGEKPYKCDFCEAAFTEKGHLKRHKRTHTGEKPYKCDICDAMFAYLSTLRSHISAHTGERRYKCDICDATFAEKRNLTKHNRIHTGEKPYKCDICDATFATKGHLTRHNRIHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01108665;
90% Identity: iTF_01108665;
80% Identity: iTF_01108665;