Basic Information

Insect: Orius laevigatus
Gene Symbol: -
Assembly: GCA_018703685.1
Location: JAGWEN010000692.1:33673-35319[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.6 1e+02 3.7 0.2 10 23 2 15 1 15 0.91

2 20 6.9e-06 0.00042 20.6 0.2 1 23 21 43 21 43 0.97

3 20 0.28 17 6.1 1.6 1 19 49 67 49 71 0.93

4 20 3.8e-05 0.0023 18.3 1.9 1 23 77 99 77 99 0.99

5 20 1.2e-05 0.00076 19.8 0.2 1 23 105 127 105 127 0.98

6 20 1.2e-05 0.00075 19.8 3.2 1 23 133 155 133 155 0.99

7 20 2.3e-06 0.00014 22.2 0.3 1 23 161 183 161 183 0.98

8 20 1.2e-05 0.00075 19.8 3.2 1 23 189 211 189 211 0.99

9 20 1.9e-05 0.0012 19.2 0.1 1 23 217 239 217 239 0.97

10 20 7.5e-06 0.00045 20.5 1.8 1 23 245 267 245 267 0.98

11 20 6.9e-06 0.00042 20.6 0.2 1 23 273 295 273 295 0.97

12 20 0.022 1.3 9.6 1.3 1 20 301 320 301 323 0.94

13 20 0.00087 0.053 14.0 5.1 1 23 329 351 329 351 0.99

14 20 1.2e-05 0.00076 19.8 0.2 1 23 357 379 357 379 0.98

15 20 1.2e-05 0.00075 19.8 3.2 1 23 385 407 385 407 0.99

16 20 5.8e-06 0.00035 20.9 0.2 1 23 413 435 413 435 0.98

17 20 1.2e-05 0.00075 19.8 3.2 1 23 441 463 441 463 0.99

18 20 1.9e-05 0.0012 19.2 0.1 1 23 469 491 469 491 0.97

19 20 2.7e-06 0.00016 21.9 0.6 1 23 497 519 497 519 0.98

20 20 4.4e-07 2.6e-05 24.4 1.3 1 23 525 547 525 547 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.6	1e+02	3.7	0.2	10	23	2	15	1	15	0.91
2	20	6.9e-06	0.00042	20.6	0.2	1	23	21	43	21	43	0.97
3	20	0.28	17	6.1	1.6	1	19	49	67	49	71	0.93
4	20	3.8e-05	0.0023	18.3	1.9	1	23	77	99	77	99	0.99
5	20	1.2e-05	0.00076	19.8	0.2	1	23	105	127	105	127	0.98
6	20	1.2e-05	0.00075	19.8	3.2	1	23	133	155	133	155	0.99
7	20	2.3e-06	0.00014	22.2	0.3	1	23	161	183	161	183	0.98
8	20	1.2e-05	0.00075	19.8	3.2	1	23	189	211	189	211	0.99
9	20	1.9e-05	0.0012	19.2	0.1	1	23	217	239	217	239	0.97
10	20	7.5e-06	0.00045	20.5	1.8	1	23	245	267	245	267	0.98
11	20	6.9e-06	0.00042	20.6	0.2	1	23	273	295	273	295	0.97
12	20	0.022	1.3	9.6	1.3	1	20	301	320	301	323	0.94
13	20	0.00087	0.053	14.0	5.1	1	23	329	351	329	351	0.99
14	20	1.2e-05	0.00076	19.8	0.2	1	23	357	379	357	379	0.98
15	20	1.2e-05	0.00075	19.8	3.2	1	23	385	407	385	407	0.99
16	20	5.8e-06	0.00035	20.9	0.2	1	23	413	435	413	435	0.98
17	20	1.2e-05	0.00075	19.8	3.2	1	23	441	463	441	463	0.99
18	20	1.9e-05	0.0012	19.2	0.1	1	23	469	491	469	491	0.97
19	20	2.7e-06	0.00016	21.9	0.6	1	23	497	519	497	519	0.98
20	20	4.4e-07	2.6e-05	24.4	1.3	1	23	525	547	525	547	0.98

Sequence Information

Coding Sequence: ATGTTTGCGTATTCAAGCACTTTAAGAAGCCACATTTCTGCTCATACTGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCATGTTTGCGTATTCAAGCACTTTGAGAAGCCACATTTCTGCTCATACTGGAGAGAAGCCTTATAAATGTGAAATCTGTGATGACATGTTTGCGTGTTCAAGCCGTTTAAAAAGGCATAAATGGATCCACACAGGTGAGAGGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGATAACGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACCGCGTCAAGCGATTTGAAAAAGCATAATAGGATCCACACAGGTGAGAAGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGAAAAGGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATATGCGAAGCTGCATTCACCGGGTCAAGCAATTTGAAAAAGCATAATAGGATCCACACAGGTGAGAAGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGAAAAGGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCCATGTTTGCGTATTTAAGCACTTTGAGAAGCCACATTTCTGCTCATACTGGAGAGAGGCGTTATAAATGTGATATATGCGATGCTACATTCGCCGAGAAACGCCATTTGACAAAGCATAATAGGATCCACACTGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCATGTTTGCGTATTCAAGCACTTTGAGAAGCCACATTTCTGCTCATACTGGAGAGAAGCCTTATAAATGTGAAATCTGTGATGCCATGTTTGCGTGTTCAAGCCGTTTAAAAAGGCATAAATGGATCCACACAGGTGAGAGGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAATGCCATTTGATAACGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACCGCGTCAAGCGATTTGAAAAAGCATAATAGGATCCACACAGGTTTGAAGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGAAAAGGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATATGCGAAGCTGCATTCACCGGGTCAAGCGATTTGAAAAAGCATAATAGGATCCACACAGGTGAGAAGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGAAAAGGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCCATGTTTGCGTATTTAAGCACTTTGAGAAGCCACATTTCTGCTCATACTGGAGAGAGGCGTTATAAATGTGATATATGCGATGCTACATTCGCCGAGAAACGCAATTTGACAAAGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCAACATTCGCCACGAAAGGCCATTTGACAAGGCATAATAGGATCCACACATGA
Protein Sequence: MFAYSSTLRSHISAHTGEKPYKCDICDAMFAYSSTLRSHISAHTGEKPYKCEICDDMFACSSRLKRHKWIHTGERPYKCDFCEAAFTEKGHLITHKRTHTGEKPYKCDICEAAFTASSDLKKHNRIHTGEKPYKCDFCEAAFTEKGHLKRHKRTHTGEKPYKCDICEAAFTGSSNLKKHNRIHTGEKPYKCDFCEAAFTEKGHLKRHKRTHTGEKPYKCDICDAMFAYLSTLRSHISAHTGERRYKCDICDATFAEKRHLTKHNRIHTGEKPYKCDICDAMFAYSSTLRSHISAHTGEKPYKCEICDAMFACSSRLKRHKWIHTGERPYKCDFCEAAFTEKCHLITHKRTHTGEKPYKCDICEAAFTASSDLKKHNRIHTGLKPYKCDFCEAAFTEKGHLKRHKRTHTGEKPYKCDICEAAFTGSSDLKKHNRIHTGEKPYKCDFCEAAFTEKGHLKRHKRTHTGEKPYKCDICDAMFAYLSTLRSHISAHTGERRYKCDICDATFAEKRNLTKHNRIHTGEKPYKCDICDATFATKGHLTRHNRIHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01108972;
90% Identity: iTF_01108972;
80% Identity: iTF_01108972;