Olae015774.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000389.1:94832-102132[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.64 2.5e+02 1.9 0.1 16 45 67 97 63 104 0.75 2 21 0.00019 0.076 13.2 0.0 6 43 86 123 83 128 0.91 3 21 0.01 4 7.6 0.1 21 43 129 151 124 156 0.90 4 21 0.028 11 6.2 0.0 17 46 152 182 149 188 0.78 5 21 0.0031 1.2 9.3 0.0 20 44 184 208 172 217 0.83 6 21 7.1e-05 0.028 14.5 0.0 10 43 229 263 223 267 0.88 7 21 0.003 1.2 9.4 0.0 21 44 269 292 264 301 0.86 8 21 1.2 4.9e+02 1.0 0.1 21 43 297 319 292 323 0.87 9 21 0.058 23 5.2 0.0 17 45 321 349 308 357 0.78 10 21 0.21 83 3.4 0.0 21 45 369 393 365 401 0.89 11 21 0.034 13 6.0 0.0 21 48 425 452 417 457 0.86 12 21 1.3 5e+02 0.9 0.1 21 43 453 475 446 484 0.77 13 21 1.1 4.3e+02 1.1 0.0 21 43 481 503 474 507 0.79 14 21 0.026 10 6.3 0.0 21 45 509 533 497 542 0.86 15 21 0.015 5.8 7.1 0.0 21 43 574 596 569 601 0.90 16 21 0.0045 1.8 8.8 0.0 21 43 602 624 597 629 0.90 17 21 0.00061 0.24 11.6 0.0 21 44 630 653 625 661 0.87 18 21 0.31 1.2e+02 2.9 0.0 21 44 658 681 653 685 0.89 19 21 0.033 13 6.0 0.0 21 44 686 709 682 717 0.88 20 21 0.25 98 3.2 0.0 21 43 714 736 709 745 0.85 21 21 0.81 3.2e+02 1.6 0.0 21 39 742 760 734 764 0.78
Sequence Information
- Coding Sequence
- ATGTTTCCGTATTTAAGCATTTTGAAAATTCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGAGACCTGCGATGCTACATTCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTGCATTCACCGAGTCATGCTATTTGAAAAGGCACAGTAGGACCCACACCGGAGAGAAGCCATTTAAATGTGATATCTGCGATACCAGGTTTGGGCATTCAAGCGGTTTAATAAAGCATCGTAGGATCCACACAGGAGAGAAGCCATACAAATGTGATATCTGCGGTGCTAAATTCACCCTGTCAAGCAATTTAAAAAGGCATAATAGGACCCACACTGGAGAGAAGCCATATAAATGTGATATCTGTGAAGCTGCATTCAACGAGTCATGCTATTTGAAAAGGCACAGTAGGACCCACACCGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCATGTTTGCGCATTCAAGCGGTTTAATAAAGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATATGCGATGCCACTTTCTCCCAGTTAAAAGGTTTAAAAAGGCATAATACGACCCACACAGGAGAGAAGCCATATAAATGTGATTTCTGCGAAGCTGCATTCACCTTGCCGGGCGATTTAAAAAGGCATAATAGGACCCATTCAGGAGAGAGGCCATATAAATGTGATATCTGCGATGCTACATTCACCGACTCAGGTAATTTAAAAAGGCATAATAGGACCCACACAGGAGAGAGGCCATATAAATGTGATATCTGCGAAGCTACATTCACCGATTCAGGCAATTTGAAAAAGCATAATAGGACCCACACAGGAGAGAAGCCATATAGATGTGATATCTGCGATAAAACATTCACCTTGCCATGCAATTTGAAAAAGCATAAGAGGGCACACACCGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGAGTCGGGTAGTTTAGAAGAGCATAATGGGATCCACACCGGAGAGAAGCCATATAAATGGGATATCTCCAATGCCAAGATCCACACAGGAGAGGAGCCATATAAATGTGATGTCTGCAATGATACATTCACCGCGTCAGGAGATTTGAAAAGGCATAATAGGATCCACACAGGAAAGAAGCAATATAAATGTGATATATGCGATGTCACTTTCACCCGGTCAAGCAGTTTGAAAGCGCATAATATGATCCACACAGGAGAGAAGCCACATAAATGTGACATCTGCGAAGCTGCATTCGCCACGTCAGGCTATTTGAAAAAGCATAATAGGATCCACAGAGGAGAAAAGCCATATAAATGTGATATCTGCGATGCTTCATTCACCGTGCCAAGCAGTTTGAAATCTCATAATTGGACCCACAAAGTGGAGAAGCCATATAAATGTGATATCTGCGATGCCATGTTTGCGTTTCCAAGTGTTTTGAAAAGCCACATTTATTCTCATACTGGAGAGAAGCCATATAAATGTGATTTCTGCGAAGCTGCATTCACCATTTCGCACGATTTAAAAAGGCATTATAGGGCCCACACAGGAGAGAAGCCATATAAATGTGATAACTGCGATGCTACATTCAGCCGTGATATATGCGATGCTACATTCAGCGCATCTGGTCATTTGACGAGGCTTAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCAATGCAACGTTCACGCAGTCAGGCCATTTGAAAATTCATAATAGGACCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCGATGCAACGTTCACGCAGTCAGGCCATTTGAAAAAGCATAATAGGACCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCGATGCAACGTTCACGCAGTCAGGCAATTTGAAAAATCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATAACTGCGAAGCTGCATTCACCGAGTCAGGCCCTTTGAAAAGGCATAAAAGGATCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCGATGCTACATTCATCGGCTCAGGGCATTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCATCGGCTCAGGGGATTTGAAAGCTCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCAACGTTCACTGCGTCAGGCCATTTGAAAATCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCAATGCAACGTTCACGCATACATCGACTATACCTTCCGGCTTCTGATGGAGAAGAAAATGAATATCCTCATCCAAGTTCCGAATGCGAAGATAAAGTCCTTCATACTGTACACACAGTTAGAGCGATCTCGACAAACGTTTGCAAAAGCATTTACAGATCTTTGAGTCAACACTACTCCAAAAGAAGAGCTGCAAGTCCTTTCTCAACAAGCTCATCAAACCCAGATTCATTATCGACTGAATCAACCGATGATGAAACCACCGATAGCAACTAA
- Protein Sequence
- MFPYLSILKIHNRTHTGEKPYKCETCDATFTXXXXXXXXXXXXXXXXXXXXXXXXAAFTESCYLKRHSRTHTGEKPFKCDICDTRFGHSSGLIKHRRIHTGEKPYKCDICGAKFTLSSNLKRHNRTHTGEKPYKCDICEAAFNESCYLKRHSRTHTGEKPYKCDICDAMFAHSSGLIKHNRIHTGEKPYKCDICDATFSQLKGLKRHNTTHTGEKPYKCDFCEAAFTLPGDLKRHNRTHSGERPYKCDICDATFTDSGNLKRHNRTHTGERPYKCDICEATFTDSGNLKKHNRTHTGEKPYRCDICDKTFTLPCNLKKHKRAHTGEKPYKCDICDATFTESGSLEEHNGIHTGEKPYKWDISNAKIHTGEEPYKCDVCNDTFTASGDLKRHNRIHTGKKQYKCDICDVTFTRSSSLKAHNMIHTGEKPHKCDICEAAFATSGYLKKHNRIHRGEKPYKCDICDASFTVPSSLKSHNWTHKVEKPYKCDICDAMFAFPSVLKSHIYSHTGEKPYKCDFCEAAFTISHDLKRHYRAHTGEKPYKCDNCDATFSRDICDATFSASGHLTRLNRIHTGEKPYKCDICNATFTQSGHLKIHNRTHTGEKPFKCDICDATFTQSGHLKKHNRTHTGEKPFKCDICDATFTQSGNLKNHNRTHTGEKPYKCDNCEAAFTESGPLKRHKRIHTGEKPFKCDICDATFIGSGHLKRHNRTHTGEKPYKCDICDATFIGSGDLKAHNRTHTGEKPYKCDICDATFTASGHLKIIIGPTQERSHINVISAMQRSRIHRLYLPASDGEENEYPHPSSECEDKVLHTVHTVRAISTNVCKSIYRSLSQHYSKRRAASPFSTSSSNPDSLSTESTDDETTDSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108661;
- 90% Identity
- iTF_01108661;
- 80% Identity
- iTF_01108661;