Olae002125.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000304.1:81141-86054[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.019 7.4 6.8 0.0 21 44 17 40 9 48 0.84 2 25 0.12 47 4.2 0.0 22 43 46 67 40 72 0.88 3 25 0.016 6.4 7.0 0.0 17 43 68 95 61 101 0.82 4 25 0.32 1.2e+02 2.9 0.0 21 44 101 124 97 128 0.89 5 25 0.00051 0.2 11.8 0.0 21 44 129 152 124 160 0.88 6 25 0.042 17 5.7 0.0 21 47 157 183 152 188 0.85 7 25 0.038 15 5.8 0.0 21 46 185 210 173 218 0.82 8 25 0.0054 2.1 8.5 0.1 21 45 241 265 236 272 0.87 9 25 0.36 1.4e+02 2.7 0.0 21 44 269 292 264 300 0.83 10 25 0.13 51 4.1 0.0 20 44 296 320 284 324 0.78 11 25 0.0098 3.8 7.7 0.0 21 43 325 347 314 352 0.87 12 25 0.0011 0.44 10.7 0.0 21 44 353 376 348 384 0.86 13 25 0.94 3.7e+02 1.4 0.0 21 43 381 403 376 412 0.79 14 25 0.15 60 3.9 0.0 20 43 408 431 395 436 0.81 15 25 0.2 77 3.5 0.0 20 46 436 462 429 468 0.79 16 25 0.37 1.4e+02 2.7 0.0 21 43 465 487 454 492 0.81 17 25 0.0057 2.2 8.5 0.0 21 52 493 524 482 525 0.85 18 25 1.3 5.3e+02 0.9 0.0 21 43 521 543 519 547 0.86 19 25 0.036 14 5.9 0.0 21 45 549 573 543 581 0.86 20 25 0.057 23 5.2 0.0 21 43 577 599 571 604 0.89 21 25 0.0052 2.1 8.6 0.0 21 45 605 629 597 636 0.84 22 25 1 4e+02 1.2 0.0 21 43 633 655 628 659 0.78 23 25 0.0004 0.16 12.2 0.0 21 43 661 683 650 688 0.87 24 25 0.017 6.7 6.9 0.0 21 44 689 712 684 720 0.84 25 25 0.7 2.8e+02 1.8 0.1 18 35 714 731 712 743 0.78
Sequence Information
- Coding Sequence
- ATGTTTGTGTATTCAAGCAAATTGAAAGTGCATAAGAGGACACACACAGGAGAGAAGCCACATAAATGTGATATCTGCGATGCTACATTCACCCGCTCATGCGATTTGAAAAATCATAATAGGACCCACACAGGAAAGAAGCCTTATAAGTGTGATATCTGCGATGCATCATTCACCGTGTCAGGGAATTTGAAAATGCATAAGAGGACACACTCAGGAGAGAAACCATATAAATGTGATATATGCAATGCTACATTCCCCACGTTGGGCAATTTGAACAGGCATAATATGACCCATACAGGAGAGAAACCATATAAATGTGATATCTGCGAAGGTGCATTCACCTCGTCATTAGATTTGAAAAAGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCCATGTTTACGTTTTCAAGCAATTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCGCCACGCCAGGCAATTTGAAAAATCATAAGAACATACACACAGGAGAGAAACCATATAAATGTGATATCTGCGAAGCTGCATTCACCTCGTCATTATATTTGAAAAAGCATAAAATGATCCACACAGGAGAGAAGCCATATAAATGTGAAATCTGCAATCATAGGTTCACCTGGTTAAGCTACTTCAAAATACACATTAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACCATGTCATGCGAATTGAAAAGGCATACTAGGACCCACACAGGGGAGAAGCCATATAAATGTGACATCTGCGATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATACTAGGACCCACACAGGGGAGAAGCCATATAAATGTGATATCTGCAATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATCATAGGATCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACTTTGTCAACCAGTTTGAAAAGGCACAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCTATGCCACTTTCACCGTGTCAGGTAGTTTGAAAAAGCATAAAAGGACCCATACAGGAGAGAAGCCATACAAATGTGATATCTGCGATGCCACTTTCACCGAGTTAGGTAGTTTGAAAACGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGATTCTACATTCACGCTGTCAAGCAGTTTGAAAAAGCATAAAAGGACCCATACAGGAGAGAAGCCATACAAATGCGATATCTGCGATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATAATAGGATCCATACAGGAGAGAAGCCTTACAAATGTGATATCTGCGATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATAATAGGATCCATACAGGAGAGAAGCCATACAAATGTGATATTTGCGATGCCACTTTTACCGTGTCAAGCAGTTTGAAAAAGCATAACAAACTCCACACAGGAGAGAAGCCATATAAATGTGAAATCTGTGATTCTACATTCACGCTGTCAAGCAGTTTGAAAATGCATAATAAGAACCACACTGGAGAGAAACCATATAAATGTGATATCTGCGAAGCTGCATTCACCTGGTCAGGCGATTTAAAAAAGCATACTAGGACCCACACAGGAGAGAAACCATATAAATGTGATATCTGCGAAGCTGCATTCACCTGGTCAGGCGATTTAAAAAAGCATAATAGGACCCACACTGGAGAGAAACCATATAAATGTGATATCTGTGAAGCTACATTCACCTGGTCAGGCGATTTAAAAAGGCATACTAGGACCCACACAGGAGAGAAGCCATACAAATGTGATATCTGCGATGCCACTTTTACCGAGTTAGGTAGTTTGAAAACGCATAATAGGATCCATACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCTACATTCACGCAGTCAAGCAGTTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCGATGCCACTTTCACCGTGTCAGGTGATTTGACAAGGCATAATAGGAGACACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCGCCAGGTTGGGCTATTTGAAAACGCATAATGGGACCCACACTGGAGAGAAGCCGTATAAATTTGATTCTGCAATGCCACACGCAGTGGGCATTTGA
- Protein Sequence
- MFVYSSKLKVHKRTHTGEKPHKCDICDATFTRSCDLKNHNRTHTGKKPYKCDICDASFTVSGNLKMHKRTHSGEKPYKCDICNATFPTLGNLNRHNMTHTGEKPYKCDICEGAFTSSLDLKKHNRIHTGEKPYKCDICDAMFTFSSNLKRHNRTHTGEKPYKCDICDATFATPGNLKNHKNIHTGEKPYKCDICEAAFTSSLYLKKHKMIHTGEKPYKCEICNHRFTWLSYFKIHIRTHTGEKPYKCDICEAAFTMSCELKRHTRTHTGEKPYKCDICDATFTELGSLKKHTRTHTGEKPYKCDICNATFTELGSLKKHHRIHTGEKPYKCDICDATFTLSTSLKRHNRTHTGEKPYKCDICYATFTVSGSLKKHKRTHTGEKPYKCDICDATFTELGSLKTHNRTHTGEKPYKCDICDSTFTLSSSLKKHKRTHTGEKPYKCDICDATFTELGSLKKHNRIHTGEKPYKCDICDATFTELGSLKKHNRIHTGEKPYKCDICDATFTVSSSLKKHNKLHTGEKPYKCEICDSTFTLSSSLKMHNKNHTGEKPYKCDICEAAFTWSGDLKKHTRTHTGEKPYKCDICEAAFTWSGDLKKHNRTHTGEKPYKCDICEATFTWSGDLKRHTRTHTGEKPYKCDICDATFTELGSLKTHNRIHTGEKPYKCDICDATFTQSSSLKRHNRTHTGEKPFKCDICDATFTVSGDLTRHNRRHTGEKPYKCDICDATFARLGYLKTHNGTHTGEKPYKFDSAMPHAVGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108659;
- 90% Identity
- iTF_01108659;
- 80% Identity
- iTF_01108659;