Olae002125.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orius laevigatus
Gene Symbol
-
Assembly
GCA_018703685.1
Location
JAGWEN010000304.1:81141-86054[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.35 21 5.8 0.5 10 23 2 15 1 15 0.94
2 27 3.9e-05 0.0023 18.3 5.2 1 23 21 43 21 43 0.98
3 27 7.2e-07 4.3e-05 23.7 0.6 1 23 49 71 49 71 0.99
4 27 2.5e-06 0.00015 22.0 0.3 1 23 77 99 77 99 0.99
5 27 0.00012 0.0073 16.7 0.3 1 23 105 127 105 127 0.98
6 27 3.5e-07 2.1e-05 24.7 1.7 1 23 133 155 133 155 0.99
7 27 7e-07 4.2e-05 23.8 0.1 1 23 161 183 161 183 0.98
8 27 5.3e-05 0.0032 17.8 0.5 1 23 189 211 189 211 0.98
9 27 0.00031 0.019 15.4 3.5 1 23 217 239 217 239 0.99
10 27 1.7e-05 0.001 19.4 2.2 1 23 245 267 245 267 0.99
11 27 1.1e-06 6.9e-05 23.1 0.7 1 23 273 295 273 295 0.99
12 27 8e-06 0.00048 20.4 1.7 1 23 301 323 301 323 0.99
13 27 4.4e-06 0.00027 21.3 1.4 1 23 329 351 329 351 0.99
14 27 7.2e-06 0.00043 20.6 1.5 1 23 357 379 357 379 0.99
15 27 1.1e-05 0.00067 20.0 0.5 1 23 385 407 385 407 0.99
16 27 2.7e-06 0.00017 21.9 2.6 1 23 413 435 413 435 0.99
17 27 1.1e-05 0.00065 20.0 0.4 1 23 441 463 441 463 0.98
18 27 1.1e-05 0.00065 20.0 0.4 1 23 469 491 469 491 0.98
19 27 5.7e-06 0.00035 20.9 1.0 1 23 497 519 497 519 0.97
20 27 0.00017 0.01 16.2 1.5 1 23 525 547 525 547 0.97
21 27 5.7e-05 0.0034 17.8 0.3 1 23 553 575 553 575 0.99
22 27 0.00025 0.015 15.7 0.2 1 23 581 603 581 603 0.99
23 27 2.2e-05 0.0013 19.0 0.5 1 23 609 631 609 631 0.99
24 27 2.5e-05 0.0015 18.9 0.3 1 23 637 659 637 659 0.98
25 27 1e-07 6e-06 26.4 1.6 1 23 665 687 665 687 0.99
26 27 3.3e-06 0.0002 21.6 0.5 1 23 693 715 693 715 0.98
27 27 5.8e-05 0.0035 17.7 0.3 1 23 721 743 721 743 0.96

Sequence Information

Coding Sequence
ATGTTTGTGTATTCAAGCAAATTGAAAGTGCATAAGAGGACACACACAGGAGAGAAGCCACATAAATGTGATATCTGCGATGCTACATTCACCCGCTCATGCGATTTGAAAAATCATAATAGGACCCACACAGGAAAGAAGCCTTATAAGTGTGATATCTGCGATGCATCATTCACCGTGTCAGGGAATTTGAAAATGCATAAGAGGACACACTCAGGAGAGAAACCATATAAATGTGATATATGCAATGCTACATTCCCCACGTTGGGCAATTTGAACAGGCATAATATGACCCATACAGGAGAGAAACCATATAAATGTGATATCTGCGAAGGTGCATTCACCTCGTCATTAGATTTGAAAAAGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCCATGTTTACGTTTTCAAGCAATTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCGCCACGCCAGGCAATTTGAAAAATCATAAGAACATACACACAGGAGAGAAACCATATAAATGTGATATCTGCGAAGCTGCATTCACCTCGTCATTATATTTGAAAAAGCATAAAATGATCCACACAGGAGAGAAGCCATATAAATGTGAAATCTGCAATCATAGGTTCACCTGGTTAAGCTACTTCAAAATACACATTAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACCATGTCATGCGAATTGAAAAGGCATACTAGGACCCACACAGGGGAGAAGCCATATAAATGTGACATCTGCGATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATACTAGGACCCACACAGGGGAGAAGCCATATAAATGTGATATCTGCAATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATCATAGGATCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACTTTGTCAACCAGTTTGAAAAGGCACAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCTATGCCACTTTCACCGTGTCAGGTAGTTTGAAAAAGCATAAAAGGACCCATACAGGAGAGAAGCCATACAAATGTGATATCTGCGATGCCACTTTCACCGAGTTAGGTAGTTTGAAAACGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGATTCTACATTCACGCTGTCAAGCAGTTTGAAAAAGCATAAAAGGACCCATACAGGAGAGAAGCCATACAAATGCGATATCTGCGATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATAATAGGATCCATACAGGAGAGAAGCCTTACAAATGTGATATCTGCGATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATAATAGGATCCATACAGGAGAGAAGCCATACAAATGTGATATTTGCGATGCCACTTTTACCGTGTCAAGCAGTTTGAAAAAGCATAACAAACTCCACACAGGAGAGAAGCCATATAAATGTGAAATCTGTGATTCTACATTCACGCTGTCAAGCAGTTTGAAAATGCATAATAAGAACCACACTGGAGAGAAACCATATAAATGTGATATCTGCGAAGCTGCATTCACCTGGTCAGGCGATTTAAAAAAGCATACTAGGACCCACACAGGAGAGAAACCATATAAATGTGATATCTGCGAAGCTGCATTCACCTGGTCAGGCGATTTAAAAAAGCATAATAGGACCCACACTGGAGAGAAACCATATAAATGTGATATCTGTGAAGCTACATTCACCTGGTCAGGCGATTTAAAAAGGCATACTAGGACCCACACAGGAGAGAAGCCATACAAATGTGATATCTGCGATGCCACTTTTACCGAGTTAGGTAGTTTGAAAACGCATAATAGGATCCATACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCTACATTCACGCAGTCAAGCAGTTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCGATGCCACTTTCACCGTGTCAGGTGATTTGACAAGGCATAATAGGAGACACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCGCCAGGTTGGGCTATTTGAAAACGCATAATGGGACCCACACTGGAGAGAAGCCGTATAAATTTGATTCTGCAATGCCACACGCAGTGGGCATTTGA
Protein Sequence
MFVYSSKLKVHKRTHTGEKPHKCDICDATFTRSCDLKNHNRTHTGKKPYKCDICDASFTVSGNLKMHKRTHSGEKPYKCDICNATFPTLGNLNRHNMTHTGEKPYKCDICEGAFTSSLDLKKHNRIHTGEKPYKCDICDAMFTFSSNLKRHNRTHTGEKPYKCDICDATFATPGNLKNHKNIHTGEKPYKCDICEAAFTSSLYLKKHKMIHTGEKPYKCEICNHRFTWLSYFKIHIRTHTGEKPYKCDICEAAFTMSCELKRHTRTHTGEKPYKCDICDATFTELGSLKKHTRTHTGEKPYKCDICNATFTELGSLKKHHRIHTGEKPYKCDICDATFTLSTSLKRHNRTHTGEKPYKCDICYATFTVSGSLKKHKRTHTGEKPYKCDICDATFTELGSLKTHNRTHTGEKPYKCDICDSTFTLSSSLKKHKRTHTGEKPYKCDICDATFTELGSLKKHNRIHTGEKPYKCDICDATFTELGSLKKHNRIHTGEKPYKCDICDATFTVSSSLKKHNKLHTGEKPYKCEICDSTFTLSSSLKMHNKNHTGEKPYKCDICEAAFTWSGDLKKHTRTHTGEKPYKCDICEAAFTWSGDLKKHNRTHTGEKPYKCDICEATFTWSGDLKRHTRTHTGEKPYKCDICDATFTELGSLKTHNRIHTGEKPYKCDICDATFTQSSSLKRHNRTHTGEKPFKCDICDATFTVSGDLTRHNRRHTGEKPYKCDICDATFARLGYLKTHNGTHTGEKPYKFDSAMPHAVGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01108963;
90% Identity
iTF_01108963;
80% Identity
iTF_01108963;