Olae002128.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000304.1:90847-95463[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0097 3.8 7.7 0.0 21 45 8 32 5 39 0.88 2 27 0.0052 2 8.6 0.0 21 47 36 62 31 67 0.83 3 27 0.011 4.2 7.6 0.0 21 44 64 87 61 92 0.90 4 27 0.011 4.5 7.5 0.0 21 46 92 117 87 123 0.86 5 27 0.019 7.4 6.8 0.1 21 44 120 143 116 151 0.86 6 27 0.37 1.5e+02 2.7 0.0 23 43 150 170 146 174 0.89 7 27 0.0016 0.63 10.2 0.0 21 44 176 199 171 203 0.89 8 27 0.0038 1.5 9.0 0.0 21 46 204 229 200 235 0.86 9 27 0.0014 0.57 10.4 0.0 21 47 232 258 227 264 0.84 10 27 2.8 1.1e+03 -0.2 0.1 21 34 260 273 256 277 0.82 11 27 0.018 7.2 6.8 0.0 22 47 317 342 305 347 0.82 12 27 0.0045 1.8 8.8 0.0 21 44 344 367 339 375 0.88 13 27 0.0028 1.1 9.4 0.0 21 43 372 394 367 399 0.90 14 27 0.052 20 5.4 0.0 21 44 400 423 395 431 0.86 15 27 0.069 27 5.0 0.0 21 43 428 450 423 455 0.89 16 27 0.0006 0.24 11.6 0.0 17 44 458 485 452 492 0.88 17 27 0.48 1.9e+02 2.3 0.0 22 44 491 513 486 518 0.85 18 27 0.0021 0.83 9.8 0.1 18 43 515 540 510 545 0.90 19 27 0.0024 0.93 9.7 0.0 21 52 546 577 541 577 0.87 20 27 0.011 4.5 7.5 0.0 21 52 574 605 570 605 0.87 21 27 0.00074 0.29 11.3 0.0 21 47 602 628 598 634 0.85 22 27 1.6 6.4e+02 0.6 0.0 21 44 630 653 622 661 0.83 23 27 0.26 1e+02 3.2 0.0 21 43 658 680 647 685 0.88 24 27 0.48 1.9e+02 2.3 0.0 21 44 686 709 683 714 0.83 25 27 0.014 5.7 7.2 0.0 21 43 714 736 706 742 0.86 26 27 0.064 25 5.1 0.0 21 47 742 768 738 774 0.85 27 27 5.6 2.2e+03 -1.1 0.1 21 32 770 781 765 783 0.86
Sequence Information
- Coding Sequence
- ATGCATAATATGACCCACACTGGAGAGAAACCATATAAATGTGATATCTGCGAAGCTGCATTCACCTGGTCAGGCGATTTAAAAAGGCATACTAGGACCCACACAGGAGAGAAGCCATACAAATGTGATATCTGCTATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATAATAAGATCCATACAGGAGAGAAGCCTTATAAATGTGATATCTGCGATGCAACGTTCACGCAGTCAGGCCATTTGAAAACGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATGTCTGCGATGCCATGTTTGCGTATTCAAGCAATTTGAAAACGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCAATGCTACATTCCCCAGGTTGGGCAATTTGAACAGGCATTATATGACCCACACAGGAAAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGTCTCAGATAGTTTGAAAAAGCATAATAGGACCCATACTGGAGAGAAGCCATACAAATGTGATATCTGCGAAGCCATGTTCAATAAGTCAAGCAATTTGAAAACGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATGTCTGCGATGCTACATTCAAGCAGTCAAGCACTTTGAAAAACCATAATAGGATCCACTCAGGAGAGAAGCCATTTAAATGTGGTATCTGCCAAGCTGCGTTCACCAACTCAAGCAATTTGAAAAACCATAATAGGATCCACACAGGAGAGAAGCCGTATAAATGTGATATCTGCGATGCAAGGTTTATGCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATGCTACATTCACCACGAGTAGCAGTTTAAAAAGGCATAATAGGACCCACACAGGAAAGAAGCCATTTAAATGTGATTTCTGCGAAGCTGCATTCATCCAGTCAGGCCATTTGAAAAGGCATAAAAGGATCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCGATGCTAAATTCACCCAGTCAAGCAGTTTGAAAAAGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCTACATTCATCCAGGCAGGCAATTTGAAAAAGCATAAGAGGACACACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGTGTCAGATAGTTTGAAAAAGCATAATAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCACTTTCACCGTGTCAGATAGTTTGAAAAAGCATAATAGGACCCATACAGGAGAGAAGCGCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGAAGCTGCATTCACTACGTCAACCAATTTGAAAAAGCATAATAGGATCCACACAGGAGAGAAGTCATATAAATGTGATATCTGCGATGCCACTTTCGCCGAGTCAGGCAGTTTGAAACAGCATTATAGGCGCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTAAATTCACCCAGTCAAGCAGTTTGAAAAAGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCACTTTCACTGCGTCAAGCAGTTTAAGAGCGCATATTAGGATCCACAAAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCACTTTCACGGCGTCAAGCAGTTTGAAAGCGCATATTAGGATCCACAAAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCACTTTCAGCCAGTCAAGCAATTTGACAAGCCATAATAGGATTCACACAGGAGAGAAGCCTTTTAAATGTGATTTATGCGAAGCTGCATTCTCCGGGTCAGGCTATTTGAAAGTTCATAATCGGTTCCACACAGGAGAGAAACCATATAAATGTGATATCTGCGATGTTGCATTCACCGCGTCATGGGATTTGAAAAAGCATAATATGATCCACACAGGAGAGAGGCCATATAAATGTGATATCTGCAATTTTGCATTCATCACGTCAACCAAATTGAAAAAGCATACTAGGACCCATACAAAAGAGAAGCCATTTAAATGTGATATCTGCGAAGCTGCATTCACCTTTTCAGGCAGTTTAAAAAGGCATAATGTAACCCACACAGGAGAGAAGCCGTACAAATGTGACATCTGCGATGCTACATTCACCGAGTCAGGCAGTTTGAAAATGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGACATCTGTGATGCAAAGTTCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAA
- Protein Sequence
- MHNMTHTGEKPYKCDICEAAFTWSGDLKRHTRTHTGEKPYKCDICYATFTELGSLKKHNKIHTGEKPYKCDICDATFTQSGHLKTHNRIHTGEKPYKCDVCDAMFAYSSNLKTHNRIHTGEKPYKCDICNATFPRLGNLNRHYMTHTGKKPYKCDICDATFTVSDSLKKHNRTHTGEKPYKCDICEAMFNKSSNLKTHNRIHTGEKPYKCDVCDATFKQSSTLKNHNRIHSGEKPFKCGICQAAFTNSSNLKNHNRIHTGEKPYKCDICDARFMQXXXXXXXXXXXXXXXXXXXXXXHATFTTSSSLKRHNRTHTGKKPFKCDFCEAAFIQSGHLKRHKRIHTGEKPFKCDICDAKFTQSSSLKKHNRTHTGEKPYKCDICDATFIQAGNLKKHKRTHTGEKPYKCDICDATFTVSDSLKKHNRTHTGEKPYKCDICDATFTVSDSLKKHNRTHTGEKRHTGEKPYKCDICEAAFTTSTNLKKHNRIHTGEKSYKCDICDATFAESGSLKQHYRRHTGEKPYKCDICDAKFTQSSSLKKHNRTHTGEKPYKCDICDATFTASSSLRAHIRIHKGEKPYKCDICDATFTASSSLKAHIRIHKGEKPYKCDICDATFSQSSNLTSHNRIHTGEKPFKCDLCEAAFSGSGYLKVHNRFHTGEKPYKCDICDVAFTASWDLKKHNMIHTGERPYKCDICNFAFITSTKLKKHTRTHTKEKPFKCDICEAAFTFSGSLKRHNVTHTGEKPYKCDICDATFTESGSLKMHNRIHTGEKPYKCDICDAKFTXXXXXXXXXXXXXXXXK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108658;
- 90% Identity
- iTF_01108658;
- 80% Identity
- iTF_01108658;