Olae002128.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orius laevigatus
Gene Symbol
-
Assembly
GCA_018703685.1
Location
JAGWEN010000304.1:90847-95463[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 4.5e-05 0.0027 18.1 0.2 1 23 12 34 12 34 0.99
2 28 0.00024 0.015 15.8 0.7 1 23 40 62 40 62 0.98
3 28 1.5e-06 9.1e-05 22.7 1.8 1 23 68 90 68 90 0.98
4 28 3.7e-06 0.00022 21.5 0.5 1 23 96 118 96 118 0.98
5 28 4.2e-07 2.6e-05 24.4 0.5 1 23 124 146 124 146 0.99
6 28 1.1e-06 6.9e-05 23.1 0.9 1 23 152 174 152 174 0.99
7 28 7.4e-06 0.00045 20.5 0.9 1 23 180 202 180 202 0.98
8 28 1.4e-06 8.4e-05 22.8 1.2 1 23 208 230 208 230 0.98
9 28 1.7e-06 0.0001 22.6 0.6 1 23 236 258 236 258 0.98
10 28 0.7 42 4.9 0.4 1 11 264 274 264 277 0.88
11 28 0.046 2.8 8.6 3.0 9 23 300 314 298 314 0.94
12 28 2e-05 0.0012 19.2 1.8 1 23 320 342 320 342 0.99
13 28 5.4e-07 3.3e-05 24.1 2.1 1 23 348 370 348 370 0.99
14 28 1.5e-07 9e-06 25.9 0.5 1 23 376 398 376 398 0.99
15 28 1.1e-06 6.9e-05 23.1 0.9 1 23 404 426 404 426 0.99
16 28 1.1e-06 6.9e-05 23.1 0.9 1 23 432 454 432 454 0.99
17 28 1.7e-06 0.0001 22.5 0.7 1 23 466 488 466 488 0.98
18 28 3.6e-06 0.00022 21.5 0.4 1 23 494 516 494 516 0.99
19 28 3.7e-07 2.3e-05 24.6 2.0 1 23 522 544 522 544 0.99
20 28 4.2e-07 2.6e-05 24.5 0.1 1 23 550 572 550 572 0.99
21 28 3.9e-07 2.3e-05 24.6 0.1 1 23 578 600 578 600 0.99
22 28 2.2e-07 1.3e-05 25.3 0.6 1 23 606 628 606 628 0.98
23 28 0.0017 0.11 13.1 0.3 1 23 634 656 634 656 0.97
24 28 8.8e-05 0.0053 17.2 0.1 1 23 662 684 662 684 0.97
25 28 2.7e-06 0.00016 21.9 2.5 1 23 690 712 690 712 0.99
26 28 0.00013 0.0076 16.7 0.4 1 23 718 740 718 740 0.96
27 28 1.8e-05 0.0011 19.3 0.3 1 23 746 768 746 768 0.98
28 28 0.63 38 5.0 1.3 1 11 774 784 774 787 0.91

Sequence Information

Coding Sequence
ATGCATAATATGACCCACACTGGAGAGAAACCATATAAATGTGATATCTGCGAAGCTGCATTCACCTGGTCAGGCGATTTAAAAAGGCATACTAGGACCCACACAGGAGAGAAGCCATACAAATGTGATATCTGCTATGCCACTTTCACCGAGTTAGGTAGTTTGAAAAAGCATAATAAGATCCATACAGGAGAGAAGCCTTATAAATGTGATATCTGCGATGCAACGTTCACGCAGTCAGGCCATTTGAAAACGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATGTCTGCGATGCCATGTTTGCGTATTCAAGCAATTTGAAAACGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCAATGCTACATTCCCCAGGTTGGGCAATTTGAACAGGCATTATATGACCCACACAGGAAAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGTCTCAGATAGTTTGAAAAAGCATAATAGGACCCATACTGGAGAGAAGCCATACAAATGTGATATCTGCGAAGCCATGTTCAATAAGTCAAGCAATTTGAAAACGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATGTCTGCGATGCTACATTCAAGCAGTCAAGCACTTTGAAAAACCATAATAGGATCCACTCAGGAGAGAAGCCATTTAAATGTGGTATCTGCCAAGCTGCGTTCACCAACTCAAGCAATTTGAAAAACCATAATAGGATCCACACAGGAGAGAAGCCGTATAAATGTGATATCTGCGATGCAAGGTTTATGCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATGCTACATTCACCACGAGTAGCAGTTTAAAAAGGCATAATAGGACCCACACAGGAAAGAAGCCATTTAAATGTGATTTCTGCGAAGCTGCATTCATCCAGTCAGGCCATTTGAAAAGGCATAAAAGGATCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCGATGCTAAATTCACCCAGTCAAGCAGTTTGAAAAAGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCTACATTCATCCAGGCAGGCAATTTGAAAAAGCATAAGAGGACACACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGTGTCAGATAGTTTGAAAAAGCATAATAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCACTTTCACCGTGTCAGATAGTTTGAAAAAGCATAATAGGACCCATACAGGAGAGAAGCGCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGAAGCTGCATTCACTACGTCAACCAATTTGAAAAAGCATAATAGGATCCACACAGGAGAGAAGTCATATAAATGTGATATCTGCGATGCCACTTTCGCCGAGTCAGGCAGTTTGAAACAGCATTATAGGCGCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTAAATTCACCCAGTCAAGCAGTTTGAAAAAGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCACTTTCACTGCGTCAAGCAGTTTAAGAGCGCATATTAGGATCCACAAAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCACTTTCACGGCGTCAAGCAGTTTGAAAGCGCATATTAGGATCCACAAAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCACTTTCAGCCAGTCAAGCAATTTGACAAGCCATAATAGGATTCACACAGGAGAGAAGCCTTTTAAATGTGATTTATGCGAAGCTGCATTCTCCGGGTCAGGCTATTTGAAAGTTCATAATCGGTTCCACACAGGAGAGAAACCATATAAATGTGATATCTGCGATGTTGCATTCACCGCGTCATGGGATTTGAAAAAGCATAATATGATCCACACAGGAGAGAGGCCATATAAATGTGATATCTGCAATTTTGCATTCATCACGTCAACCAAATTGAAAAAGCATACTAGGACCCATACAAAAGAGAAGCCATTTAAATGTGATATCTGCGAAGCTGCATTCACCTTTTCAGGCAGTTTAAAAAGGCATAATGTAACCCACACAGGAGAGAAGCCGTACAAATGTGACATCTGCGATGCTACATTCACCGAGTCAGGCAGTTTGAAAATGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGACATCTGTGATGCAAAGTTCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAA
Protein Sequence
MHNMTHTGEKPYKCDICEAAFTWSGDLKRHTRTHTGEKPYKCDICYATFTELGSLKKHNKIHTGEKPYKCDICDATFTQSGHLKTHNRIHTGEKPYKCDVCDAMFAYSSNLKTHNRIHTGEKPYKCDICNATFPRLGNLNRHYMTHTGKKPYKCDICDATFTVSDSLKKHNRTHTGEKPYKCDICEAMFNKSSNLKTHNRIHTGEKPYKCDVCDATFKQSSTLKNHNRIHSGEKPFKCGICQAAFTNSSNLKNHNRIHTGEKPYKCDICDARFMQXXXXXXXXXXXXXXXXXXXXXXHATFTTSSSLKRHNRTHTGKKPFKCDFCEAAFIQSGHLKRHKRIHTGEKPFKCDICDAKFTQSSSLKKHNRTHTGEKPYKCDICDATFIQAGNLKKHKRTHTGEKPYKCDICDATFTVSDSLKKHNRTHTGEKPYKCDICDATFTVSDSLKKHNRTHTGEKRHTGEKPYKCDICEAAFTTSTNLKKHNRIHTGEKSYKCDICDATFAESGSLKQHYRRHTGEKPYKCDICDAKFTQSSSLKKHNRTHTGEKPYKCDICDATFTASSSLRAHIRIHKGEKPYKCDICDATFTASSSLKAHIRIHKGEKPYKCDICDATFSQSSNLTSHNRIHTGEKPFKCDLCEAAFSGSGYLKVHNRFHTGEKPYKCDICDVAFTASWDLKKHNMIHTGERPYKCDICNFAFITSTKLKKHTRTHTKEKPFKCDICEAAFTFSGSLKRHNVTHTGEKPYKCDICDATFTESGSLKMHNRIHTGEKPYKCDICDAKFTXXXXXXXXXXXXXXXXK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01108962;
90% Identity
iTF_01108962;
80% Identity
iTF_01108962;