Orus045313.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:28639704-28649481[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0021 40 6.1 0.1 26 49 38 61 32 63 0.91 2 11 0.016 3e+02 3.2 0.1 26 48 68 90 66 94 0.91 3 11 0.066 1.2e+03 1.3 0.0 27 48 98 119 91 121 0.89 4 11 0.12 2.3e+03 0.4 0.0 26 48 206 228 191 231 0.82 5 11 7.7e-05 1.5 10.6 0.2 27 48 237 258 232 263 0.88 6 11 0.013 2.5e+02 3.5 0.1 26 48 313 335 306 338 0.89 7 11 0.36 6.8e+03 -1.1 0.0 27 48 373 394 370 398 0.88 8 11 0.00045 8.5 8.2 1.0 25 48 401 424 391 427 0.87 9 11 0.68 1.3e+04 -2.0 0.0 27 50 433 455 432 459 0.74 10 11 0.042 7.9e+02 1.9 0.1 19 48 454 482 445 487 0.74 11 11 0.00017 3.1 9.6 0.4 25 50 489 514 480 518 0.83
Sequence Information
- Coding Sequence
- ATGGTGGAAATGTCCGTCAATTGGATCAAGCAAGAACTCATCAAGAACGAAGATGATGTGGTAAAACCAGAACTATCGATGGGTTATTATGGCaaacaaatagaaaaatatgtttGTGAGGTTTGTAATAAGCCCTTCAAACAGCTGAAAAATTTGCGCTTGCATTCAAAGATGCAGCACTTGGATATTACGGTCCTGCACACGTGTACCATCTGTCACAAGGGTTTCAAGTACAAAAATAGTTTGGACAGACATATCAAGACGATGCATTCCAATAACGAACTTTTCATGTGTTTCAATTGTGATGCCTCTTTTAAGTACAAGAGAACTTTGAAGAAGCACGTTAACGAAAAGCATTCGGAAATCAGGGAAACTTTCAAGTGTGCCTTCTGTGACAAAATTAGTTCTATTGTACTTCACATATTTGCTGAAGATGCTAAAGATGTTCGTTCTGATCAACAATTGACTTGTGAAACTGAAATCATCATTTCCAGTTTCCTCACCAAGTGGATCAAAGAAGAGGAAATTGATGATATTCCTGATCTATTGAACATTGAAgacatcaaaaaagaaaaagaatcaTCATCAGACACGATAAAACAAAGTAACAAGTTCAAATGTAACTTATGTGACAAGTTATTCACGCGTAAGAACAACTTAAATCATCACATCAAGGTTCTGCATAATGAATATCACGATAAATTCAAATGTACTCTGTGTAATAGAGGCTTCACACATAAAGTCAATCTGCGCAGGCATATGGAGCTTAAGCATTCGGAGAGTCAACCAATCAAATGCGAGTCCATAGACTTGGTCAAGCATGAACTCATCAAAAATGAAGACGATGTGGTAAAATCAGAACTATTGGAGTTTGAGGATAATAAACAAGAAACCATGGACGTAGCGGGTTATTATGGCGAACaaatggaaaaatatgtttgtgCGGTTTGTGAGAAGCCCTTCAAACAGCTGCAACATTTGCGTATTCATATAAAGATGCAGCACTCGAATAATTTAGTCCTGCACAAGTGTACGCTCTGTGATAAGGGTTTCCAGTACAAAAGTAGTTTTAAACAACATATTAGGGTGGTGCATTCCGATATCAAacgatttaattgtttcaattgtGATGCTTCTTACAAGTCcaagaataatttgatgaaTCACGTCAAGACAAAACATTCGGATATCCAGGAAACTTTCCAGTGTGACTTCTGTGACAAAGTTTGTGATCGCAAGTCCAACTTGCGTCATCATGTTGAGCGACGACATCCGTACAACATTGAGGAAATCGAATGTGAATTTTGTCACAAGTCgttcagaaaaatcaatttgcaaAAACATGTCCAGCGGATGCATTCGGAAAAAAGTGAGATGGTACAGTGTGAAATCTGTAAAGAGACTTTGAGGAAGTTTGATTTGCAACGTCACGTCAGGTGGATGCATTCGGAAGATAACGATAAACTCAGATGTGTGATCTGCGACAGAGCCTTCACGCAAATGACTAATTTGCGTAGACATGTCAGAACCATGCACTCgcataaaataaatataatgtaA
- Protein Sequence
- MVEMSVNWIKQELIKNEDDVVKPELSMGYYGKQIEKYVCEVCNKPFKQLKNLRLHSKMQHLDITVLHTCTICHKGFKYKNSLDRHIKTMHSNNELFMCFNCDASFKYKRTLKKHVNEKHSEIRETFKCAFCDKISSIVLHIFAEDAKDVRSDQQLTCETEIIISSFLTKWIKEEEIDDIPDLLNIEDIKKEKESSSDTIKQSNKFKCNLCDKLFTRKNNLNHHIKVLHNEYHDKFKCTLCNRGFTHKVNLRRHMELKHSESQPIKCESIDLVKHELIKNEDDVVKSELLEFEDNKQETMDVAGYYGEQMEKYVCAVCEKPFKQLQHLRIHIKMQHSNNLVLHKCTLCDKGFQYKSSFKQHIRVVHSDIKRFNCFNCDASYKSKNNLMNHVKTKHSDIQETFQCDFCDKVCDRKSNLRHHVERRHPYNIEEIECEFCHKSFRKINLQKHVQRMHSEKSEMVQCEICKETLRKFDLQRHVRWMHSEDNDKLRCVICDRAFTQMTNLRRHVRTMHSHKINIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01107762; iTF_01107808;
- 90% Identity
- iTF_01107762; iTF_01107808;
- 80% Identity
- iTF_01107762; iTF_01107808;