Basic Information

Gene Symbol
nfxl1
Assembly
GCA_943138245.1
Location
CALPBP010001109.1:188804-201968[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2 5.7e+04 -5.0 1.9 15 19 163 167 163 167 0.85
2 18 0.15 4.2e+03 -0.5 0.8 4 10 198 204 197 204 0.95
3 18 3.6e-08 0.001 20.6 17.7 1 19 212 229 212 229 0.99
4 18 4.3e-08 0.0012 20.4 16.3 1 18 265 282 265 283 0.97
5 18 0.48 1.4e+04 -2.1 0.2 6 10 308 312 307 314 0.88
6 18 6.6e-06 0.19 13.4 13.6 1 18 318 335 312 336 0.86
7 18 1.3e-06 0.036 15.7 12.7 1 18 371 388 371 389 0.97
8 18 1 3e+04 -3.2 0.2 1 4 398 401 398 402 0.88
9 18 0.00039 11 7.7 17.3 1 18 423 440 423 441 0.92
10 18 1.5e-09 4.3e-05 25.0 12.7 1 19 450 468 450 468 0.97
11 18 0.0021 60 5.4 4.5 9 18 516 525 514 526 0.92
12 18 0.00047 13 7.5 8.1 1 12 535 545 535 545 0.96
13 18 2 5.7e+04 -4.4 2.8 14 18 571 575 571 576 0.85
14 18 0.95 2.7e+04 -3.1 0.9 10 12 602 604 600 607 0.55
15 18 3.9e-05 1.1 11.0 5.6 1 11 612 622 612 623 0.98
16 18 2 5.7e+04 -6.0 4.3 6 10 640 644 637 644 0.81
17 18 3.3e-05 0.95 11.2 14.3 3 18 653 668 652 669 0.94
18 18 6.8e-07 0.019 16.6 11.5 1 16 713 727 713 733 0.93

Sequence Information

Coding Sequence
ATGAGTTCACATAACAGTAAGAAATCCACTAATGCCTGGAACAAAAGTATCCCAGGCCGACAAAAAGAAACTGAAAAACAAAATCCTACTCGAagtgaaacaaaatttaaagaagCACAGCTTAAACTACAAGCAGCAGTAGAGAAGTATTCAAAAGATTATGAATCATCTTCTTCTGAAGATGAATTGGAATCCGAACATGTTATTGagacTCTTCTGAAAAATTATTCACAAGTTGGAGGTAAATCAGAATCCTTAGGGCGTACACAAATTTTCCTTGAAGACGCTTTGACTTCTGGTGCTGCaacatgtttaatttgtataGGATCGATTAAAAGAATAGAAAAAATATGGAGTTGTACGTCTTGCTACTGTTTCTTCCACCTTCAATGCATAGAAAGGTGGTCAAAAGACAGTGTTGTTCAACAAAAGGAATCCCTGCGTGAACAACCACTGAACACCAATGTGATTAAAATTCATTGGGGATGTCCAAAATGTCGTTTTGAATATAGTGCAGAAGATATACCAAGAGAATATAAATGCTTTTGTGAAAAGACTATAAATCCAAGTTTCCAACCATGGCTTGTACCTCATTCTTGTGGAgaaacttgtaataaaaaattaaaaccgaTATGTGGCCACAACTGCACTCTTCTTTGTCATCCAGGCCCATGTCCACCATGCCCCAAAACTGTAAAAGTTTCTTGCTACTGTGGGTCGAAGCCTGAAAAAATTCAACGTTGTTCCAACAAAGAATGGTCATGTGGATCtccttgtaataaaatattaggaTGCGGTAAACATCCATGCAAAAAACCATGTCATTCTGGTGTTTGCCCCCCTTGTTTGAAAACTAGTAAGCAGAAATGTAATTGTGGAGCCCAAGAACAATTAACGGAGTGTGCTACGCCTAACTGGCAATGCAACAAGGTTTGTGGACGTAAACTTTCTTGCGAAAATCATTGGTGTGAAAAAAAATGTCATACGGGACCTTGTGGAGATTGTGCCTTGACTTTACTTCGATATTGTCCCTGTGGTAAAAGCAACTACATACTATCTTGTATTGAAGAAACACCAACATGCGGTGATACATGCGGTAAATTGTTAGAGTGTGGATCACATACATGCAATCAAAGATGTCATAAAGATAAATGTGGGACTTGTTTAGAAAtggcaattaaaatatgtagatgTGGATTACATGAAAAAGAAGTACAAtgtaagaaacaatttttatgtgAAACAAAATGTAAACGAATGAAGGATTGTCAAAGGCATCCATGCAATAGAaagtgTTGCGATGGAACTTGTCCACCTTGTGAAAAACCTTGTGGCCGGACTTTGCCATGTGGTTTACACAAATGCCCATCAATTTGTCATCGTGGCCCATGTTACCCTTGCACTCTGACTTCTATTGTACGTTGTTACTGCGGAGGAACTAGCATTACTGTGCCTTGTGGTCGTCGCAAACGAACTCGTCCTCCACGCTGTCTTCGCCTTTGTAAACGACCTCCAATTTGCCATCACCCAGCGAACAAACCACATAAATGCCATTTCGGAGATTGTCCCATTTGCATTCAAATTTgtgataaaaagttaaaatgtgGACATCGTTGTCCACAAAAGTGTCATTCGAATGTATTAGTTAAAGTGGGACAAAAAGCTTCAATGCCGTGGGAACAAGGAGAAATGATAGAAAGAAAAGAGTTACCCTGTCCAGATTGTTATGTTCCTGTTCCTATAACATGTTTTGGAGGGCATGAAACTGCGAATTGGCCATGTCATACTGCAAAAATAAGATCATGTCACAAACCGTGCGGACGCCAACTTATTTGTGGAAATCATACTTGTCAATTAGATTGTCATATAGTCGAAGATTCGGCTAATGCTTTGGCGgctGGATCGAACTGTGAACAGTGCGAAAATCCTTGCACATTTCCTCGACCAAAAGGTTGCCAACATGATTGTCCTCGTCGTTGTCATTCAGGTCCTTGTTCCTCTTGTAATAATATGATACGCTTGAAATGCCATTGTGGATTGAATCAACCATATCTCCGCTGTTCAGAATGGACTACCGAAGAAGCGAATAGAGAGTTATTACTGAGTTGTGGTAATCAGTGCCCCAAAAACTACGATTGCGGACATCGTTGCAAATCAAATTGTCATTCGGGGCCATGTCCAAATGCTGAATTATGCAAGAAAAAAGTTAAAGTATTTTGTTCTTGTAAAAGGATTAAAAAAGAATATTCATGTGAATTAATTCGAAAGAATTCAGTTCTGGTGGAATGCGACGAAATTTGTATGAAAGAAAAAGATGAAAGGAAGAAAATGTATGAGAAGGAATTGGAGGTAAAGAAAAAAGAGGAAGAAGCAAGAAATGCTAAAGAATTGgaacaatttcaaaagaaatttcagggtaaaaaaaaatataaggatAGGAGACGAAATTATTATGAAGAACAAACTAATTTTATTCAGAAATACTGGATGTTTATTTTTGCTGTTGCCGTtgcatttattacaatttacattatttgGTAA
Protein Sequence
MSSHNSKKSTNAWNKSIPGRQKETEKQNPTRSETKFKEAQLKLQAAVEKYSKDYESSSSEDELESEHVIETLLKNYSQVGGKSESLGRTQIFLEDALTSGAATCLICIGSIKRIEKIWSCTSCYCFFHLQCIERWSKDSVVQQKESLREQPLNTNVIKIHWGCPKCRFEYSAEDIPREYKCFCEKTINPSFQPWLVPHSCGETCNKKLKPICGHNCTLLCHPGPCPPCPKTVKVSCYCGSKPEKIQRCSNKEWSCGSPCNKILGCGKHPCKKPCHSGVCPPCLKTSKQKCNCGAQEQLTECATPNWQCNKVCGRKLSCENHWCEKKCHTGPCGDCALTLLRYCPCGKSNYILSCIEETPTCGDTCGKLLECGSHTCNQRCHKDKCGTCLEMAIKICRCGLHEKEVQCKKQFLCETKCKRMKDCQRHPCNRKCCDGTCPPCEKPCGRTLPCGLHKCPSICHRGPCYPCTLTSIVRCYCGGTSITVPCGRRKRTRPPRCLRLCKRPPICHHPANKPHKCHFGDCPICIQICDKKLKCGHRCPQKCHSNVLVKVGQKASMPWEQGEMIERKELPCPDCYVPVPITCFGGHETANWPCHTAKIRSCHKPCGRQLICGNHTCQLDCHIVEDSANALAAGSNCEQCENPCTFPRPKGCQHDCPRRCHSGPCSSCNNMIRLKCHCGLNQPYLRCSEWTTEEANRELLLSCGNQCPKNYDCGHRCKSNCHSGPCPNAELCKKKVKVFCSCKRIKKEYSCELIRKNSVLVECDEICMKEKDERKKMYEKELEVKKKEEEARNAKELEQFQKKFQGKKKYKDRRRNYYEEQTNFIQKYWMFIFAVAVAFITIYIIW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00769319; iTF_00767788;
90% Identity
iTF_00769319; iTF_00767788;
80% Identity
-