Hrub022185.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpalus rubripes
Gene Symbol
nfxl1
Assembly
GCA_963082715.1
Location
OY720451.1:37373656-37390354[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3 9.2e+04 -5.0 1.9 15 19 166 170 166 170 0.85
2 18 0.22 6.8e+03 -0.5 0.8 4 10 201 207 200 207 0.95
3 18 5.4e-08 0.0017 20.6 17.7 1 19 215 232 215 232 0.99
4 18 1.1e-08 0.00033 22.9 16.4 1 18 268 285 268 286 0.97
5 18 2 6.2e+04 -3.6 1.8 6 10 311 315 310 315 0.89
6 18 7.3e-09 0.00023 23.4 11.4 1 18 321 338 321 339 0.98
7 18 3.6e-06 0.11 14.8 11.5 1 18 374 391 374 392 0.97
8 18 1.6 4.8e+04 -3.2 0.2 1 4 401 404 401 405 0.88
9 18 0.00059 18 7.7 17.3 1 18 426 443 426 444 0.92
10 18 2.3e-09 7e-05 25.0 12.7 1 19 453 471 453 471 0.97
11 18 0.0032 98 5.4 4.5 9 18 519 528 517 529 0.92
12 18 0.00071 22 7.5 8.1 1 12 538 548 538 548 0.96
13 18 3 9.2e+04 -4.4 2.8 14 18 574 578 574 579 0.85
14 18 2.4 7.5e+04 -3.8 1.4 10 12 605 607 603 609 0.52
15 18 5.8e-05 1.8 11.0 5.6 1 11 615 625 615 626 0.98
16 18 3 9.2e+04 -6.0 4.3 6 10 643 647 640 647 0.81
17 18 0.0024 74 5.8 13.1 3 19 656 672 655 672 0.94
18 18 1e-06 0.031 16.6 11.5 1 16 716 730 716 736 0.93

Sequence Information

Coding Sequence
ATGAGTTCACATAACAGTAAGAAATCCACTAATGTGTGGAATAAAAGTACACCAGGCCGACAAAAAGAAacgcaaaataatcaaaaagaaAATCCTTCTCGAagtgaaacaaaatttaaagaagcaCAGCTTAAACTACAAGCAGCGGTAGAAAAATACACAAAAGATTATGAATCTTCTTCTTCTGAAGATGAATTGGAATCCGAACAAGTTATTGaaacaCTCCTGAAAAATTATTCTCAAGTTGGAGGTAAATCAGAATCTTTAGGCCGTACACAAGTTTTTCTTGAAGACGCTTTGACTTCTGGTGCTGCAACATGTTTAATTTGTATAGGATCGATTAAAAGAATAGAAAAAATATGGAGTTGTACGTCTTGCTATTGTTTCTTCCACCTTCAATGCATAGAACGGTGGTCAAAAGACAGCGTTATTCAACAGAAGGAATCACTACGTGAACAACCAGGGAACactaatgtaattaaaattcaTTGGGGATGCCCAAAATGTCGTTTTGAATATAGTGCAGAAGATATACCAAGAGAATACAAATGCTTTTGTGAAAAGACTATAAATCCAAGTTTCCAACCATGGCTTGTACCTCATTCTTGTGGAGAAACTTGTAATAAGAAATTAAAACCGGTATGTGGGCACAACTGCACTCTTCTTTGTCATCCAGgCCCTTGTCCACCGTGCCCCAAAACTGTTAAAGTTTCTTGCTACTGTGGATCGAAGACTGAAAAAATTCAACGTTGTTCCAACAAAGAATGGTCATGTGGATcaccttgcaataaaatattgGGATGCGGTAAACATCCATGCAAAAAACCATGTCATTCCGGGGCTTGTCCCCCGTGTTTGAAGACTAGTAAGCAAAAATGTAATTGTGGAGCCCAAGAACAATTAACTGAGTGTGCTACGCCTAACTGGCAATGCAAAAAGGTTTGTGGACGTAAACTTTCTTGTGGAAATCATTGGTGTGAAAAAACTTGTCATTCGGGGCCTTGTGGATATTGTGCCCTGACTTTACTTCGATATTGTCCCTGTGGTAAAAGCAACTACAAACTATCTTGTATTGAAGAAACACCAACATGCGGTGATACGTGCGGTAAAATGTTAGGGTGTGGATCACATACATGCAATCAAAGATGTCATAAAGATAAATGTGGGATTtgtTTAGAAATGGCTATAAAAGTATGTAGGTGTGGATTACATGAAAAGGAAGTACAATGtaagaaacaatttttatgtgaaacaaaatgtaaaagaaTGAAGGATTGTCAAAGGCATCCGTGCAATAgaaagTGTTGCGATGGAACTTGTCCACCTTGCGAAAAACCTTGTGGCCGGACTTTGCCATGTGGTTTACACAAATGTCCCTCTATTTGTCATCGTGGCCCATGTTACCCTTGTACTCTGACTTCTATTGTTCGTTGTTACTGCGGAGGAACTAGCATTACTGTGCCTTGTGGTCGTCGCAAACGTACTCGTCCTCCACGCTGCCTTCGCCTTTGTAAACGATCTCCAATTTGTCATCACCCAGCGAACAAGCCACATAAATGTCACTTCGGAGATTGTCCCATTTGCATTCAAATTTgcgataaaaagttaaaatgtgGGCATCGTTGCCCACAAAAGTGTCATTCGAACGTATTAGTTAAAGTGGAACAAAAAGCTTCTATGCCGTGGGAACAAGGAGAAATGATAGAAAGAAAAGAGTTACCCTGTCCAGACTGTTATGTTCCTGTTCCTGTAACATGTTTTGGAGGACATGAAACTGCGAATTGGCCATGTCATACTGCAAAAGTAAGATCGTGTCACAAACCGTGTGGACGGCAACTTATTTGTGGAAATCATACTTGTCAATTAGATTGTCATATAGTCGAAGATGCAGTTAATGATTTAGCGgCTGGTTCAAACTGTGAACAATGCGAAAATCCTTGTATATTTCCTAGGCCAAAAGGTTGCCAACATGATTGTCCTCGTCGTTGTCATTCAGATGCATGCCCCTCTTGTAAAAATATGCTACGGTTAAAATGTCATTGTGGATTGAATCAACCATATGTCCGCTGTTCAGAATGGACTACCGAAGAAGCAAATACAGAGTTACTACAGAGTTGTGGTAATCAGTGCCCCAAAAACTACGATTGCGGACATCGTTGCAAATCAAATTGTCATTCGGGGCCATGCCCAAATGCTGAATTATGCAAGAAAAAAGTTAAagtattttgtacatgtaaaagGATTAAAAAAGAATTTTCATGTGAATTAATTCGAAACAAATTTGTTGTGGTGGAATGCGACGAAATTTGTATGAAAGAAAAAgatgaaaagaagaaaatgtGTGAAAAGGAATTAGAGGCAAAGAAAAAAGAGGAAGAAGCAAGAAATGCTATAGAATTGGAAAAATTTCAGAAGAAATTTCAgggtaaaaagaaatataaggATAGAAAACGAAACTATGACGTTGAACAAATGAATTTTATTCAGAAATACTGGATGTTTATTTTTGCTGTTACTGTTGCATTTATTACAGTTTACATAATTTGGTAA
Protein Sequence
MSSHNSKKSTNVWNKSTPGRQKETQNNQKENPSRSETKFKEAQLKLQAAVEKYTKDYESSSSEDELESEQVIETLLKNYSQVGGKSESLGRTQVFLEDALTSGAATCLICIGSIKRIEKIWSCTSCYCFFHLQCIERWSKDSVIQQKESLREQPGNTNVIKIHWGCPKCRFEYSAEDIPREYKCFCEKTINPSFQPWLVPHSCGETCNKKLKPVCGHNCTLLCHPGPCPPCPKTVKVSCYCGSKTEKIQRCSNKEWSCGSPCNKILGCGKHPCKKPCHSGACPPCLKTSKQKCNCGAQEQLTECATPNWQCKKVCGRKLSCGNHWCEKTCHSGPCGYCALTLLRYCPCGKSNYKLSCIEETPTCGDTCGKMLGCGSHTCNQRCHKDKCGICLEMAIKVCRCGLHEKEVQCKKQFLCETKCKRMKDCQRHPCNRKCCDGTCPPCEKPCGRTLPCGLHKCPSICHRGPCYPCTLTSIVRCYCGGTSITVPCGRRKRTRPPRCLRLCKRSPICHHPANKPHKCHFGDCPICIQICDKKLKCGHRCPQKCHSNVLVKVEQKASMPWEQGEMIERKELPCPDCYVPVPVTCFGGHETANWPCHTAKVRSCHKPCGRQLICGNHTCQLDCHIVEDAVNDLAAGSNCEQCENPCIFPRPKGCQHDCPRRCHSDACPSCKNMLRLKCHCGLNQPYVRCSEWTTEEANTELLQSCGNQCPKNYDCGHRCKSNCHSGPCPNAELCKKKVKVFCTCKRIKKEFSCELIRNKFVVVECDEICMKEKDEKKKMCEKELEAKKKEEEARNAIELEKFQKKFQGKKKYKDRKRNYDVEQMNFIQKYWMFIFAVTVAFITVYIIW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01105252;
90% Identity
iTF_01105252;
80% Identity
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