Hruf007450.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- nfxl1
- Assembly
- GCA_951394225.1
- Location
- OX596275.1:34481348-34490522[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2 6.8e+04 -5.0 1.9 15 19 166 170 166 170 0.85 2 18 0.15 5e+03 -0.5 0.8 4 10 201 207 200 207 0.95 3 18 3.6e-08 0.0012 20.6 17.7 1 19 215 232 215 232 0.99 4 18 1.5e-08 0.00053 21.8 15.1 1 18 268 285 268 286 0.97 5 18 0.44 1.5e+04 -2.0 0.4 6 10 311 315 310 317 0.88 6 18 2.7e-06 0.091 14.7 13.3 1 18 321 338 315 339 0.86 7 18 2.2e-06 0.075 14.9 12.8 1 18 374 391 374 392 0.97 8 18 1 3.6e+04 -3.2 0.2 1 4 401 404 401 405 0.88 9 18 0.00039 13 7.7 17.3 1 18 426 443 426 444 0.92 10 18 1.5e-09 5.2e-05 25.0 12.7 1 19 453 471 453 471 0.97 11 18 0.0021 72 5.4 4.5 9 18 519 528 517 529 0.92 12 18 0.28 9.7e+03 -1.4 12.9 1 12 538 548 538 548 0.96 13 18 1.1 3.7e+04 -3.3 2.7 14 18 574 578 574 579 0.87 14 18 0.95 3.2e+04 -3.1 0.9 10 12 605 607 603 610 0.55 15 18 1.7e-05 0.58 12.1 4.7 1 11 615 625 615 629 0.96 16 18 2 6.8e+04 -6.0 4.3 6 10 643 647 640 647 0.81 17 18 1.1e-05 0.37 12.7 14.1 3 19 656 672 655 672 0.94 18 18 6.8e-07 0.023 16.6 11.5 1 16 716 730 716 736 0.93
Sequence Information
- Coding Sequence
- atgaGTTCACATAACAGTAAGAAATCAAATAATGTCTGGAATAAAAGTACCCCAGGCCGACAAAAAGAAACGCAAAATATCCAAAAACAAAATCCTTCTCGaagtgaaacaaaatttaaagaagCACAGCTTAAACTACAAGCAGCAGTAGAAAAGTACACAAAAGATTATGAATCTTCTTCTTCTGAAGATGAATTGGAATCCGAACAAGTTATTGaaacTCTTCTGAAAAAATATTCCCAAGTTGGAGGTAAATCAGAATCTTTAGGTCGTACacaagtttttcttgaagacgCTTTGACATCTGGTGCTGCAACATGTTTAATTTGTATAGGATCGATTAAAAGAATAGAAAAAATATGGAGTTGTACATCTTGCtactgtttcttccaccttcaaTGCATAGAAAGGTGGTCAAAAGACAGCGTTTTTCAACAGAAGGAATCACTACGTGAACAACCACCAAACactaatgtaattaaaattcattGGGGATGTCCAAAATGTCGTTTTGAATATAGTGCAGAAGATATACCAAGAGAATATAAATGCTTTTGTGAAAAGACTTTAAATCCAAGTTTTCAACCATGGCTTGTGCCTCATTCTTGTGGAGAAACTTGTAATAAGAAATTAAAACCGATATGTGGCCACAACTGTACTCTTCTTTGTCATCCAGgcCCGTGTCCACCATGCCCCAAAACTGTTAAAGTTTCTTGTTACTGTGGATCGAAGATTGAAAAAATTCAACGTTGTTCCAACAAAGAATGGTCATGTGGATcaccttgcaataaaatattggGATGCGGTAAACATCCATGCAAAAAACCATGTCATTCTGGTGCTTGCCCCTCGTGTTTGAAGACTAGTAAGCAGAAGTGTAATTGTGGAGCCCAAGAACAATTAACTGAGTGTGCTACGCCTAACTGGCAATGCAAGAAGGTTTGTGGACGTAAACTTTCTTGCGAAAATCATTGGTGTGAAAAAACTTGTCATTCGGGGCCTTGTGGAGATTGTGCTCTGACTTTACTTCGATATTGTCCCTGTGGTAAAAGCAACTACAAACTGTCTTGTATTCAAGAAACACCAACATGCGGTGATACGTGCGGTAAAATGTTAGAGTGTGGATCACATAAATGTAATCAAAGATGTCATAAAGATAAATGTGGGACTTGTTTAGAAAtggcaataaaaatatgtaggtgtgGATTACATGAAAAAGAAGTACAATgtaagaaacaatttttatgtgaaacaaaatgtaaaagaaTGAAGGACTGTCAAAGGCATCCGTGCAATAGAaagTGTTGCGATGGAACTTGTCCACCTTGTGAAAAACCATGTGGCCGGACTTTGCCATGTGGTTTACATAAATGCCCATCTATTTGTCATCGTGGTCCATGTTACCCCTGCACTCTGACTTCTATTGTTCGTTGTTACTGCGGAGGAACTGGCATTACTGTACCTTGTGGCCGTCGCAAGCGAACTCGTCCTCCACGCTGCCTTCGCTTTTGTAAACGATCTCCAATTTGTCATCATCCAGTGAACAAACCACATAAATGCCATTTCGGAGATTGTCCCATTTGCATTCAGATTTGCGATAAAAAGTTAAAATGTGGACATTGTTGTCCACAAAAGTGTCATTCGAACGTATTAGTTAAAGTGGGACAAAAAGCTTCAATGCCGTGGGAACAAGGAGAAATGATAGAAAGAAAAGAGTTACCCTGTCCAAATTGTTATGTTCCTGTTCCTGTAACATGTTTTGGAGGGCATGAAACTGCGAATTGGCCATGTCATACTGCAAAAATAAGATCGTGTCACAAACCGTGCGGACGGCAACTTAATTGTGGAAATCATACTTGTCAATTAGATTGTCATATAGTCGAAGGTGCAGCTAATGATTTAGCGGCTGGCTCAAACTGTGAACAATGCGAAAATCCATGTACATTTCCTCGGCCAAAAGGTTGCCAACATGATTGTCCTCGTCGTTGTCATTCAGGTGCATGTCCCTCTTGTAAAAATATGCTACGTTTAAAATGTCATTGTGGATTGAATCAACCATATGTCCGCTGTTCAGAATGGACTACCGAAGGAGCAAATACAGAGTTATTACAGAGTTGTGGTAATCAGTGCCCCAAAAacTACGATTGTGGACATCGTTGCAAATCAAATTGTCATTCGGGGCCATGCCCAAATGCTGAATtatgcaagaaaaaaattaaagtattttgtTCTTGTAAAAGGATTAAAAAAGAATTTTCTTGTGAATTAATTCGAAACAAGTCAGTTGTGGTGGAATGCGATGAAATTTGtttgaaagaaaaagaagaaaggaAGAAAATGTATGAAAAGGAGATGGAGGCAAAGAAAAAAGAGGAAGAAGCAAGAAATGCAAAAGAATTGGAACAATTTCAAAAGAAGTTTCAGGgcaaaaagaaatataaggacAGAAGACGAAATTATGATGTAGAACAAACGAATTTTATTCAGAAATACTGGATGTTTATTTTTGCCGTTGCCGTtgcatttattacaatttatataatttggtaa
- Protein Sequence
- MSSHNSKKSNNVWNKSTPGRQKETQNIQKQNPSRSETKFKEAQLKLQAAVEKYTKDYESSSSEDELESEQVIETLLKKYSQVGGKSESLGRTQVFLEDALTSGAATCLICIGSIKRIEKIWSCTSCYCFFHLQCIERWSKDSVFQQKESLREQPPNTNVIKIHWGCPKCRFEYSAEDIPREYKCFCEKTLNPSFQPWLVPHSCGETCNKKLKPICGHNCTLLCHPGPCPPCPKTVKVSCYCGSKIEKIQRCSNKEWSCGSPCNKILGCGKHPCKKPCHSGACPSCLKTSKQKCNCGAQEQLTECATPNWQCKKVCGRKLSCENHWCEKTCHSGPCGDCALTLLRYCPCGKSNYKLSCIQETPTCGDTCGKMLECGSHKCNQRCHKDKCGTCLEMAIKICRCGLHEKEVQCKKQFLCETKCKRMKDCQRHPCNRKCCDGTCPPCEKPCGRTLPCGLHKCPSICHRGPCYPCTLTSIVRCYCGGTGITVPCGRRKRTRPPRCLRFCKRSPICHHPVNKPHKCHFGDCPICIQICDKKLKCGHCCPQKCHSNVLVKVGQKASMPWEQGEMIERKELPCPNCYVPVPVTCFGGHETANWPCHTAKIRSCHKPCGRQLNCGNHTCQLDCHIVEGAANDLAAGSNCEQCENPCTFPRPKGCQHDCPRRCHSGACPSCKNMLRLKCHCGLNQPYVRCSEWTTEGANTELLQSCGNQCPKNYDCGHRCKSNCHSGPCPNAELCKKKIKVFCSCKRIKKEFSCELIRNKSVVVECDEICLKEKEERKKMYEKEMEAKKKEEEARNAKELEQFQKKFQGKKKYKDRRRNYDVEQTNFIQKYWMFIFAVAVAFITIYIIW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105252;
- 90% Identity
- iTF_01105252;
- 80% Identity
- -