Basic Information

Insect: Ophion ventricosus
Gene Symbol: prdm10
Assembly: GCA_963932345.1
Location: OZ010712.1:21538764-21545674[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.9e-05 0.0044 17.6 0.6 2 23 500 521 499 521 0.95

2 14 4.4e-08 4e-06 27.2 1.3 1 23 555 577 555 577 0.98

3 14 0.034 3 8.7 2.6 1 23 586 609 586 609 0.97

4 14 0.13 12 6.8 0.2 2 23 627 648 626 648 0.92

5 14 0.0002 0.018 15.7 0.2 2 23 661 682 661 682 0.95

6 14 0.0007 0.062 14.0 3.8 1 23 699 721 699 721 0.97

7 14 0.011 0.98 10.2 2.0 2 23 730 751 729 751 0.96

8 14 0.007 0.63 10.8 0.1 1 23 758 780 758 780 0.98

9 14 0.00035 0.031 14.9 0.8 1 23 787 809 787 810 0.95

10 14 0.0035 0.31 11.8 2.8 1 23 815 837 815 837 0.98

11 14 0.00022 0.02 15.5 4.4 1 23 843 866 843 866 0.96

12 14 0.0018 0.16 12.7 1.7 1 23 900 923 900 923 0.97

13 14 0.00014 0.012 16.2 2.0 1 23 945 968 945 968 0.95

14 14 0.0041 0.36 11.6 3.4 3 23 1006 1027 1006 1027 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.9e-05	0.0044	17.6	0.6	2	23	500	521	499	521	0.95
2	14	4.4e-08	4e-06	27.2	1.3	1	23	555	577	555	577	0.98
3	14	0.034	3	8.7	2.6	1	23	586	609	586	609	0.97
4	14	0.13	12	6.8	0.2	2	23	627	648	626	648	0.92
5	14	0.0002	0.018	15.7	0.2	2	23	661	682	661	682	0.95
6	14	0.0007	0.062	14.0	3.8	1	23	699	721	699	721	0.97
7	14	0.011	0.98	10.2	2.0	2	23	730	751	729	751	0.96
8	14	0.007	0.63	10.8	0.1	1	23	758	780	758	780	0.98
9	14	0.00035	0.031	14.9	0.8	1	23	787	809	787	810	0.95
10	14	0.0035	0.31	11.8	2.8	1	23	815	837	815	837	0.98
11	14	0.00022	0.02	15.5	4.4	1	23	843	866	843	866	0.96
12	14	0.0018	0.16	12.7	1.7	1	23	900	923	900	923	0.97
13	14	0.00014	0.012	16.2	2.0	1	23	945	968	945	968	0.95
14	14	0.0041	0.36	11.6	3.4	3	23	1006	1027	1006	1027	0.98

Sequence Information

Coding Sequence: ATGGATTCACGGGGCCCTCCCGAGGGGGCCCCTGGCGATCCACTCGAGATGTCGATTATGGACAGCAAATCTTCCGAGATTTCGGAAAACTGGCCAGCTACCAATCTCCTCGCCTCGGCTCTCGGCGATCATTCGAGAAAATCCAACAACAGATTATTATTTTTGACTGTCGAGTACGTGGAGGACCAGTCGAGGGATTATTCGAGAATGTTTCCGGCATACGAGCAGGCGCCGTTTTCTCCACGAGCCGCGTCGCCGCTCTCGGACTTCGAGCATCGAGTCAGTCCGTTGGATCCGAACATGAGCTCGACAGCGAGATACTCACCTACTCCGGTTCCCTTGCCACCTCTGCCGTTTCACAATTCCGTCGTGGTACTTCAGGGTCCGCCTTCGCCGCTCGTTGTGCAACCCGAGACTGAGACCAACGCCTCTCCCAGTATCGATTTCACTGGTGATCGAGCCAGAAACGAAAGCGTACAGGAGAGCCACAATGTGGCCGATTTTGTGGATACAGGGAACGAGGAGGAATTGGTTGCCGGCGTCGGCGAGGAACTGATCCTGATGCAAGGTACGACAGCTGAATTGGAGGCACCGGCACCGCTCATGCTGGCAGGCATGCCAGGTGCAGAATTTGCTCTGACGAGGGATTTCCTTGTGATGCAAGATGACCAGATAAACGTCATGAGCACTCTGCGCAATCAGGATGCAAACGTGGACGAGCAGGTGGCTGCCACGGTTGTGACACAGTCAATCGTATCGCAGAACGAAAACGACGACGTTTCGCTGACGATTCCGATGGCTCAGAGCATACAGAACGACGCGGTGAAGGAGCGACCGAAGGAGGGACAGCCCGTGAAGCAAGTCGAGCAAGATACCGATAAGAGAATCGTGAGACGCTCGAGACGACAGATAAACGATAAGAAGACCTACTGGTGCGACCGGTGCGATTCCATTTGTCACAAGTCCGGCGAATGCAGTCTGAACAATGTTCGCACAATCGCGGATCAGCCGGTACCCTCGAGGGCCATAGCGACACTTCCGGGCTCTTATTTGTCGATCAACAAATTGTCATGTTCCGTTAGTTCGACGTTGTCCACTAGAGTCACAAATTTCGGCGTATTCGCCAAACGTAACATTCGCGCGCGAACCCAATTTGGACCTATCGAGGGCATTCTTTGTCCCTACGAGGGTACGCCCTTCAAGGATTCATTGCCGCTGCTTTACGAAACTGAGATCGGAGAATTCTTCAAAATCGACGTGTCCAATGAAAACGCCTCGAACTGGATGCGATTCGTTCGGCCTGCCACAACGTACAAGGAGCAGAACCTTGGCATCTGCCAACAGGGTGATGGCATCGTGTTTCTAACGACGCGCAACATTTTACCGAAGGAAGAGCTGAAGGCTGGACCTAATCCGGAATACGCTGTTCGTAGAAGCTTGAAGATTCTCGAGCCCGAAACGAAAGACGACAGAGAGCCGACTGATTCAAACGCGTGGCCGTGTTTCGAGTGCAATCAGCGCTTCTCAACGTCGGCTAAGCTGCAGAAACACTTGACGATTCACGACAGCCCGAAGAGCGAGACGAAGTCGAAAATGAGGCGTAAAAAGATGACTGTGCCGACAAACAAACTCTTCAAAGTTGTGGACGGACAGACCTCGCTGTACACGTGTCCGCACTGTCCCAAGGTATTCCCGCGAAGTTACAGCCTGAAGCGTCACCTGCTGATACATCCGGGGGCGAAATCCCCGCCGCGTTACGAGTGCTCGTCGTGCGGCGAAAAGTTCTTGCATCCTCGAAATCGCAATCGTCACGTGAAGATGTTTCACGCGAACGACGCTAAGGAGAAGGAGAACTCCCGCCAGAACACGAGCGAATGGAGATGCGCGACCTGTAATTTAACATTCGGCAAGTCAACGCTTCTCAGTATACACAGCCTGGCGCACACGAGCAACGTTATCGTTGCCGAAAATTTGGACAACGTTTGTCCCCAATGTGGAGAGGATTTTGAGACACGCGCCCATCTGATAAATCACGTTGGCAAACACGGGCGTGtgcaatcgacgaagacaacgaAATTGACGAGCCTGGCGTCTCACAAGTGCAACATGTGTTACAAACGATTCGCTACCAAAGTGCGATTACAGCAGCATTATTTGGTACACGGTGCCGAGGACCAAAAACCACTGCCGTGCAACATTTGCCTGAAACGCTTTATGAACAACTCGGCTCTCTCGTGCCACTTGAAAACTCACAGAGAGGACAAGCAAATATTCGAATGCCCGATGTGCCGAGAGCTTTTCAATCAAGTCTTAATGCTCAAAGATCATATCGAAACACATCGAAACGAGGACGAGACTTTCAGTTGTCCTCAATGCCCGAGGGCCTTCGTTAAATATTCCGTCATCCGTAAACACATAAGAGCTCATCACTGTGAACGCAAGCACAAGTGTCAATTTTGCGCCAAGCGCTTTCCCACCGTTGACAAATTACGAATGCATCTGCTACGTCACTCCGATCACAGACAATTTCATTGTGCCAATTGCGAGAAACAATTTAAACGCAAGGACAAGCTTAAAGAGCACATGACGAGGATGCATGATTCGCAAAGAACAAAGCGCGATCAGACAACGCAGAACAACAACCAGATGAAGAAGTTCGTGCCAAAGGTAAATCCGACGGattataatcgattcatttacAAGTGTCATCAATGCCTGGTCGGCTTCAAGAGACGTGGTATGCTCGTTAATCATCTGGCGAAACGCCATCCCGACGTTTCCCCCGAATCGGTGCCCGAATTGAACTTGCCGATTCTCCGACAGACCCGAGATTATTACTGCCAATACTGCGACAAAGTTTACAAGAGCAGTAGCAAGAGGAAAGCTCACATCGTGAAGAATCATCCGGGCGCTGCGCTGCCGCCGAGCAATCGTCACAAAGAGGCGGACGTGCCGGGTCTGCCGAATTTAACGTTCAGTCAGACTGTGGGCAGCGTAACGACAACGCCACAAGGCTGTCAATGGTGTCACAAGCAATACGCGAGCAAAGCCAAGCTCTTGCAGCATCAACGAAAGAAACACTCGACCCTCATGGAGCCGGCCGACAAAGTGCCACGTGCCCGCAATCGGCCTCCCCGCGAGCGTACGCAATCGTCGAATCTCGTTGACGGTAATTTTCTCATCAGCGATTATCTGCAGGCTTGCGAGATCGACGGGGACTTTTTGAAGCCTAAGATGATCAAGATTACGGCGGACGTTGATCTCGTCGGCAACAGCGGCTTGGAGCTCGTCGGTCAGCAACAATTTGTACGTATGCGAGATATACGCTGA
Protein Sequence: MDSRGPPEGAPGDPLEMSIMDSKSSEISENWPATNLLASALGDHSRKSNNRLLFLTVEYVEDQSRDYSRMFPAYEQAPFSPRAASPLSDFEHRVSPLDPNMSSTARYSPTPVPLPPLPFHNSVVVLQGPPSPLVVQPETETNASPSIDFTGDRARNESVQESHNVADFVDTGNEEELVAGVGEELILMQGTTAELEAPAPLMLAGMPGAEFALTRDFLVMQDDQINVMSTLRNQDANVDEQVAATVVTQSIVSQNENDDVSLTIPMAQSIQNDAVKERPKEGQPVKQVEQDTDKRIVRRSRRQINDKKTYWCDRCDSICHKSGECSLNNVRTIADQPVPSRAIATLPGSYLSINKLSCSVSSTLSTRVTNFGVFAKRNIRARTQFGPIEGILCPYEGTPFKDSLPLLYETEIGEFFKIDVSNENASNWMRFVRPATTYKEQNLGICQQGDGIVFLTTRNILPKEELKAGPNPEYAVRRSLKILEPETKDDREPTDSNAWPCFECNQRFSTSAKLQKHLTIHDSPKSETKSKMRRKKMTVPTNKLFKVVDGQTSLYTCPHCPKVFPRSYSLKRHLLIHPGAKSPPRYECSSCGEKFLHPRNRNRHVKMFHANDAKEKENSRQNTSEWRCATCNLTFGKSTLLSIHSLAHTSNVIVAENLDNVCPQCGEDFETRAHLINHVGKHGRVQSTKTTKLTSLASHKCNMCYKRFATKVRLQQHYLVHGAEDQKPLPCNICLKRFMNNSALSCHLKTHREDKQIFECPMCRELFNQVLMLKDHIETHRNEDETFSCPQCPRAFVKYSVIRKHIRAHHCERKHKCQFCAKRFPTVDKLRMHLLRHSDHRQFHCANCEKQFKRKDKLKEHMTRMHDSQRTKRDQTTQNNNQMKKFVPKVNPTDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVSPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRHKEADVPGLPNLTFSQTVGSVTTTPQGCQWCHKQYASKAKLLQHQRKKHSTLMEPADKVPRARNRPPRERTQSSNLVDGNFLISDYLQACEIDGDFLKPKMIKITADVDLVGNSGLELVGQQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01100817;
90% Identity: iTF_01101560;
80% Identity: -