Basic Information

Insect: Ophion ellenae
Gene Symbol: prdm10
Assembly: GCA_963210295.1
Location: OY723391.1:22610048-22625580[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.6e-05 0.012 16.8 0.5 2 23 492 513 491 513 0.95

2 14 5.5e-08 7.1e-06 27.0 1.0 1 23 547 569 547 569 0.98

3 14 0.037 4.8 8.7 2.6 1 23 578 601 578 601 0.97

4 14 0.15 19 6.8 0.2 2 23 619 640 618 640 0.92

5 14 0.00099 0.13 13.6 0.0 2 23 653 674 653 674 0.95

6 14 0.00076 0.099 14.0 3.8 1 23 691 713 691 713 0.97

7 14 0.012 1.6 10.2 2.0 2 23 722 743 721 743 0.96

8 14 1.3 1.7e+02 3.8 1.1 1 23 750 772 750 772 0.97

9 14 0.00025 0.033 15.5 1.4 1 23 779 801 779 802 0.95

10 14 0.0039 0.5 11.8 2.8 1 23 807 829 807 829 0.98

11 14 0.00024 0.032 15.5 4.4 1 23 835 858 835 858 0.96

12 14 0.002 0.26 12.7 1.7 1 23 892 915 892 915 0.97

13 14 0.00015 0.02 16.2 2.0 1 23 937 960 937 960 0.95

14 14 0.0045 0.58 11.6 3.4 3 23 998 1019 998 1019 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.6e-05	0.012	16.8	0.5	2	23	492	513	491	513	0.95
2	14	5.5e-08	7.1e-06	27.0	1.0	1	23	547	569	547	569	0.98
3	14	0.037	4.8	8.7	2.6	1	23	578	601	578	601	0.97
4	14	0.15	19	6.8	0.2	2	23	619	640	618	640	0.92
5	14	0.00099	0.13	13.6	0.0	2	23	653	674	653	674	0.95
6	14	0.00076	0.099	14.0	3.8	1	23	691	713	691	713	0.97
7	14	0.012	1.6	10.2	2.0	2	23	722	743	721	743	0.96
8	14	1.3	1.7e+02	3.8	1.1	1	23	750	772	750	772	0.97
9	14	0.00025	0.033	15.5	1.4	1	23	779	801	779	802	0.95
10	14	0.0039	0.5	11.8	2.8	1	23	807	829	807	829	0.98
11	14	0.00024	0.032	15.5	4.4	1	23	835	858	835	858	0.96
12	14	0.002	0.26	12.7	1.7	1	23	892	915	892	915	0.97
13	14	0.00015	0.02	16.2	2.0	1	23	937	960	937	960	0.95
14	14	0.0045	0.58	11.6	3.4	3	23	998	1019	998	1019	0.98

Sequence Information

Coding Sequence: ATGGATTCGCGGGGCCCTCCCGAGGGGGCCCCTGGCGATCCACTCGAGATGTCAATTATGGACAGCAAATCTTCCGAGATTTCGGAAAACTGGCCAGCTACCAATCTCCTTGCCTCGGCTCTCGGCGATCATTCGAGAAAATCCAACAacagattattatttttgactGTCGAGTACGTGGAGGATCAGTCAAGGGATTATTCGAGAATGTTTCCGGCGTACGAGCAGGCGCCGTTCTCTCCCCGAGCGGCGTCGCCGCTCTCGGACTTTGAGCACCGAGTAAGTCCGTTGGATCCGAACATGAGCTCGGCGGCGAGATACTCGCCTACTCCGGTTCCCCTGCCGCCGTTGCCGTTCCACAATTCGGTAGTGGTACTTCAGGGTCCGCCTTCGCCGCTCGTCGCGCAAGCCGAGGCCGAGACCAACCCATCCGCGAATGTCGACTTTGCCGGTGATCGGGGCAGGAGCGAGAGCGCTCGGGGGGGCGACGTCGTGGCCGATTTCGCGGATGCCGGGAACGAGGAGGAACTGGTGGCCAGTGTCGGAGAGGAATTGATCCTGATGCAAGGTACGACGGCTGGACTGGAGGCGCCCGCACCGCTCATGCTCGCGGGCATACCCGGCACGGAATTTGCTCTGACGAGGGACTTCCTCGTGATGCAAGACGACCAGATAAACGTCATAAGCACTCTGCGCAATCAGGATGCAAGCGTGGACGAGCGGGCGGTTTCGCAAAACCGAAACGACAACGTGGCAATGACGGTTCCGATGGCCCAGAGCATTCGGAACGGCGCGGAGAAGGAGCGAATAAAGGAGGAACAGCCCGCGAGGCCATTAGAGCACCAGGACACCGACGAGAGAATCGTCAGACGCTCGAGACGACAGATAAACGACAAGAAGACCTACTGGTGCGATCAGTGCGATTCCATTTGTCACAAATCCGGCGAATGCAGTCGGAACAACGTTCGCACCATCGCGGATCAACCGGTACCCTCCAGGGCCATAGCCACACTTCCGGGCTCCTACCTGTCGATCAATAAATTGTCGTGTTCCGCCGCTACGGCCCCCTCCACTCGAGCCACAAATTTCGGCGTTTTCGCCAAACGTAACATTCGCGCCCGAACTCAATTTGGACCGATCGAGGGCATTCTTTGTCCCTACGATGGTACGCCCTTCGAGGATTCATTGCCGCTGCTCTACGAAACGGAGAACGGAGAATTCTTCAAAATCGACGTGTCCAATGAAAACGCCTCGAACTGGATGCGATTCGTCCGGCCCGCCGCGACGTCCAAGGAGCAGAACCTCGGGATCTGCCAACAGGGTGACGGTATCGTGTTTCTGACAACGCGCAACATTCTGCCGAAGGAGGAGCTCAAGGCTGGCCCCAATCCGGAATACGCTTATCGTAGAAGCTTGAAGATTCTCGAGCCCGAAACGAAAATCGACAGAGAGCCGAGTGATTCAAACGCGTGGCCGTGTTTCGAGTGCAATCAGCGCTTTTCAACGTCGGCCAAGCTGCAGAACCATTTGACGATCCACGACAGCCCGAAGAGCGAGACGAAATCGAGAATGAGGCGTAAAAAGATGAACGTGCCGACAAACAAACTCTTCAAAGTCGTGGACGGACAGACCTCGCTGTACACATGTCCGCACTGCCCGAAGGTATTCCCGCGGAGTTACAGCCTGAACCGTCACCTGCTGATACATCCGGGGGCGAAATCACCGCCCCGTTACGAGTGCTCGTCGTGCGGCGAAAAGTTTTTGCATCCCCGCAATCGCAATCGTCACGTGAAGATGTTTCACGCTAACGACGCCAAGGAGAAGGAGAACTCCCGCCAGAACTCGAGCGAGTGGAGATGCGCGACGTGTAATTTGACATTCGGCAAGTCAACGCTCCTCAGTATCCACAGCCTGGCGCACACGAGCAACGTTATCGTtgctgaaaatttggacaaCGTTTGTCCCCAATGCGGCGAGGATTTCGGGACACGCGCCGATCTTATAAATCACGTTGGCAAACACGGGCGTGTGCCATTGACGAAGTCAACGAAGTTGACGAGCCTGGCGTCTCACAAGTGCAACATGTGCTACAAACGATTCGCCACCAAAGTGCGATTACAGCAGCATTATTTGGTACACGGTGCCGAGGACCAAAAACCACTGCCGTGCAACATTTGCCTGAAACGCTTTATGAACAACTCGGCCCTCTCGTGCCATTTGAAAACTCACCAAGAGGACAAGCAAATATTCGAATGTTCGATGTGCTGCGAGCTTTTCAATCAAGTCTTAATGCTCAAAGATCATATCGAGACACATCGAAACGAGGACGAGACCTTCAGTTGTCCTCAATGCCCGAGGACCTTCGTTAAGTATTCCGTCATCCGTAAACACATAAGAGCTCATCACTGTGAACGCAAGCACAAGTGTCAATTTTGCGCCAAGCGCTTTCCCACCGTTGACAAATTACGAATGCATCTGCTACGTCACTCCGATCACAGACAATTTCATTGCGCCAATTGCGAGAAACAATTTAAACGCAAGGACAAGCTCAAGGAGCATATGACGAGGATGCACGATTCACAGAGAACAAAGCGCGATCAGACAGCCCAGAACAACAACCAGATGAAGAAGTTCGTGCCGAAGGTGAATCCGACAGATTACAATCGATTCGTTTACAAGTGTCATCAATGCCTGGTCGGCTTCAAGAGACGCGGAATGCTCGTTAATCATCTGGCGAAACGCCATCCCGATGTATCCCCCGAATCGGTGCCCGAATTGAACTTGCCGATTCTGCGACAGACCCGGGATTATTACTGCCAATACTGCGACAAAGTTTACAAGAGCAGCAGCAAGAGGAAGGCTCACATCGTGAAGAATCATCCGGGTGCTGCGCTACCGCCGAGCAATCGTCAAAAAGAGGCGGACGTGCCGGGTCTGCCGAATTTGACGTTCAGTCAGACGGTGGGCAGCGTGACGACAACCCCGCAGGGCTGTCAATGGTGTCACAAGCAATACGCGAGCAAGGCAAAGCTCTTGCAGCATCAGCGAAAGAAACACTCGACCCTGATGGAGCCGGCCGACAAAGTGCCACGTGCCCGCAATCGGCCGCCACGCGAGCGTACGCAATCGTCGAATCTCGTGGACGGTAATTTTCTCATGAGCGATTATCTGCAGGCTTGCGAGATCGACGAGGACTTTTTGAAGCCTAAGATTATCAAGATCACGGCGGACGTTGATCTCGTCGGCAACAGCGGCCTTGAGCTCGTCGGTCAGCAACAATTTGTACGTATGCGAGATATACGCTGA
Protein Sequence: MDSRGPPEGAPGDPLEMSIMDSKSSEISENWPATNLLASALGDHSRKSNNRLLFLTVEYVEDQSRDYSRMFPAYEQAPFSPRAASPLSDFEHRVSPLDPNMSSAARYSPTPVPLPPLPFHNSVVVLQGPPSPLVAQAEAETNPSANVDFAGDRGRSESARGGDVVADFADAGNEEELVASVGEELILMQGTTAGLEAPAPLMLAGIPGTEFALTRDFLVMQDDQINVISTLRNQDASVDERAVSQNRNDNVAMTVPMAQSIRNGAEKERIKEEQPARPLEHQDTDERIVRRSRRQINDKKTYWCDQCDSICHKSGECSRNNVRTIADQPVPSRAIATLPGSYLSINKLSCSAATAPSTRATNFGVFAKRNIRARTQFGPIEGILCPYDGTPFEDSLPLLYETENGEFFKIDVSNENASNWMRFVRPAATSKEQNLGICQQGDGIVFLTTRNILPKEELKAGPNPEYAYRRSLKILEPETKIDREPSDSNAWPCFECNQRFSTSAKLQNHLTIHDSPKSETKSRMRRKKMNVPTNKLFKVVDGQTSLYTCPHCPKVFPRSYSLNRHLLIHPGAKSPPRYECSSCGEKFLHPRNRNRHVKMFHANDAKEKENSRQNSSEWRCATCNLTFGKSTLLSIHSLAHTSNVIVAENLDNVCPQCGEDFGTRADLINHVGKHGRVPLTKSTKLTSLASHKCNMCYKRFATKVRLQQHYLVHGAEDQKPLPCNICLKRFMNNSALSCHLKTHQEDKQIFECSMCCELFNQVLMLKDHIETHRNEDETFSCPQCPRTFVKYSVIRKHIRAHHCERKHKCQFCAKRFPTVDKLRMHLLRHSDHRQFHCANCEKQFKRKDKLKEHMTRMHDSQRTKRDQTAQNNNQMKKFVPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPDVSPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRQKEADVPGLPNLTFSQTVGSVTTTPQGCQWCHKQYASKAKLLQHQRKKHSTLMEPADKVPRARNRPPRERTQSSNLVDGNFLMSDYLQACEIDEDFLKPKIIKITADVDLVGNSGLELVGQQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01100817;
90% Identity: iTF_01103034; iTF_01102269; iTF_01103752; iTF_01100817;
80% Identity: -