Basic Information

Insect: Ophion costatus
Gene Symbol: prdm10
Assembly: GCA_951751655.1
Location: OX632362.1:20417474-20428728[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00017 0.019 15.9 0.3 2 23 505 526 504 526 0.95

2 14 7e-07 8e-05 23.4 1.7 1 23 560 582 560 582 0.98

3 14 0.034 3.9 8.7 2.6 1 23 591 614 591 614 0.97

4 14 0.14 16 6.8 0.2 2 23 632 653 631 653 0.92

5 14 0.0014 0.16 13.0 0.1 3 23 667 687 666 687 0.96

6 14 0.0007 0.08 14.0 3.8 1 23 704 726 704 726 0.97

7 14 0.011 1.3 10.2 2.0 2 23 735 756 734 756 0.96

8 14 0.069 7.9 7.7 0.2 1 23 763 785 763 785 0.98

9 14 0.00023 0.027 15.5 1.4 1 23 792 814 792 815 0.95

10 14 0.0036 0.41 11.7 2.8 1 23 820 842 820 842 0.98

11 14 0.00022 0.026 15.5 4.4 1 23 848 871 848 871 0.96

12 14 0.00029 0.033 15.2 2.0 1 23 905 928 905 928 0.97

13 14 0.00014 0.016 16.2 2.0 1 23 950 973 950 973 0.95

14 14 0.0041 0.47 11.5 3.4 3 23 1011 1032 1011 1032 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00017	0.019	15.9	0.3	2	23	505	526	504	526	0.95
2	14	7e-07	8e-05	23.4	1.7	1	23	560	582	560	582	0.98
3	14	0.034	3.9	8.7	2.6	1	23	591	614	591	614	0.97
4	14	0.14	16	6.8	0.2	2	23	632	653	631	653	0.92
5	14	0.0014	0.16	13.0	0.1	3	23	667	687	666	687	0.96
6	14	0.0007	0.08	14.0	3.8	1	23	704	726	704	726	0.97
7	14	0.011	1.3	10.2	2.0	2	23	735	756	734	756	0.96
8	14	0.069	7.9	7.7	0.2	1	23	763	785	763	785	0.98
9	14	0.00023	0.027	15.5	1.4	1	23	792	814	792	815	0.95
10	14	0.0036	0.41	11.7	2.8	1	23	820	842	820	842	0.98
11	14	0.00022	0.026	15.5	4.4	1	23	848	871	848	871	0.96
12	14	0.00029	0.033	15.2	2.0	1	23	905	928	905	928	0.97
13	14	0.00014	0.016	16.2	2.0	1	23	950	973	950	973	0.95
14	14	0.0041	0.47	11.5	3.4	3	23	1011	1032	1011	1032	0.98

Sequence Information

Coding Sequence: ATGGATTCGCGGGGCCCTCCCGAGGGGGCCCCTGGCGATCCACTCGAGATGTCGATTATGGACAGCAAATGTTCCGAAATTTCGGAAAACTGGTCAGCTACCAATCTCCTTGCCTCGGCTCTCGGAGATCATGCGAGAAAATCCAACAAcagattattatttttgactGTTGAGTACGTGGAGGATCAGTCGAGGGATTATTCGCGAATGTTTCCGGCGTACGAGCAGGTGCCGTTCTCTCCACGAGCAGCGTCGCCGCTCTCGGACTTTGAGCACCGAGTAAGTCCGTTGGACCCAAACATGAGCTCGACGGCTAGATACTCGCCTACTCCGGTTCCCCTGCCGCCGTTGCCTTTCCACAATTCGGTGGTGGTACTTCAGGGTCCGCCTTCGCCGCTCGTCGTGCAAGCCGAGGCTGAGACCAACGTGTCCGCGAGTATCGACTTCGTCGGGGATCGGGCTAGGAACGAGAGCGCTCGGGGCGGCGACCGCGTGGCTGATTTCGTGGATGCCGGGAACGAGGAGGAACTGGTGACCGGCGTCGGGGAGGAATTGATCCTGATGCAAGGTACGACGGCTGGATTGGAGGCACCCGCACCGCTCATGCTTGCGGGCATACCCGGCACGGAATTTGCTTTGACGAGGGACTTCCTCGTGATGCAAGATGACCAGATAAACGTCATGGGCACTCTGCGCAACCAGCATGCAAGCGTGGACGAGCAGGCGGCCGCCGCGGTTGCGACGCAGTCGATCGTTTCGCAGAACGGAAACGACGACGTGGCAATGACGGTTTCGATGGTCCAGGGCATTAGGAACGGAACGGAGAAGGAACGACTCAAGGAACGACTGAAGGTGGAACCGCCAGTGAGGCACGTAGAGCAGCAGGACAGCAGCGAGAGAATGGTCAGACGCTCGAGGCGACAGATAAACGACAAGAAGACCTACTGGTGCGATCAGTGCGATTCCATTTGTCACAAGTCCGGTGAATGCAGTCTGAACAACGTTCGCACCATTGCGGATCAACCGGTACCCTCCAGGGCCATAGCCACACTTCCGGGCTCCTATCTGTCGATCAACAAATTGCCCTGTTCCGCCGCTGCGACGTCCTCCACTAGAGCCACAGATTTCGGCGTTTTCGCCAGACGCAACATTCGCGCCCGAACTCAATTTGGACCGATCGAGGGCATTCTTTGTCCCTACGATGGTACGCCCTTCGAGGATTCATTGCCGCTGCTCTACGAAACGGAGAACGAAGAATTCTTCAAAATCGACGTGTCCAATGAAAATGCCTCGAACTGGATGCGATTCGTCCGGCCTGCCATGACGTACGAGGAGCAGAACCTCGGGATCTGCCAACAAGGTGACGGTATCGTGTTTCTGACGACGCGCAACATTTTGCCGAAGGAGGAGCTGAAGGCTGGCCCCAATCCGGAATACGCTGCTCGTAGAAGCTTGGAGATTCTCGAGCCCGGAATGAAAAACGACGGAGACCGGAGTGACTCGAACGCGTGGCCGTGTTTCGAGTGCAATCAACGCTTTTCAACGTCGGCCAAGCTGCAGGAACACTTGACGATCCACGACAGCCCGAAGAGCGAGACAAAGTCGAGAATGAGGCGTAAAAATATGAACGTGCCGACAAACAAACTCTTCAAAGTGGTGGACGGACAGACTTCGCTCTACACGTGTCCGCACTGCCTGAAGGTATTCCCGCGAAGTTACAGCCTGAAGCGTCACCTGCTGATACATCCGGGGGCGAAATCACCGCCCCGTTACGAGTGCTCGTCGTGCGGCGAGAAGTTTTTGCATCCCCGCAATCGCAATCGTCACGTGAAGATGTTTCACGCTAACGACGCTAAGGAGAAGGAGAATTCCCGTCAGAACTCGAGCGAGTGGAGATGCGCGACGTGTAATTTGACATTCGGCAAGTCGACGCTCCTCAGTATCCACAGCCTGGCGCACACGAGCAACGTTATCGTTGCTGAAAATTTGGACAACTTTTGTCCCCAATGCGGCGAGGATTTCGGGACACGCGCCGATCTTATAAATCACGTCGGCAAACACGGGCGTGTGCAGTTGACGAAGTCAACGAAATTGACGAGCCTGGCGTCTCACAAGTGCAATATGTGTTACAAACGATTCGCTACCAAAGTGCGATTACAGCAGCATTACTTGGTACACGGTGCCGAGGACCAAAAACCACTGCCGTGCAACATTTGCCTGAAACGCTTTATGAACAACTCGGCCCTCTCGTGCCACTTGAAAACTCACAGAGAGGACAAGCAAATATTCGAATGCCTCATGTGCCGCGAGCTTTTCAATCAAGTCTTAATGCTCAAAGATCATATCGAAACACATCGAAACGAGGACGAGACCTTCAGTTGTCCTCAATGCCCGAGGACCTTCGTTAAATATTCCGTCATCCGTAAACACATAAGAGCTCATCACTGTGAACGCAAGCACAAGTGTCAATTTTGCGCCAAGCGCTTTCCCACCGTTGACAAATTACGAATGCATCTGCTACGTCACTCCGATCACAGACAATTTCATTGCGCCAATTGCGAGAAACAGTTCAAACGCAAGGACAAGCTCAAGGAGCATATGACGAGGATGCACGATTCACAAAGAACGAAGCGCGATCAGACAGCCCAGGACAACAACCAGTTGAAGAAGTTTGTGCCGAAGGTGAATCCGACGGATTACAATCGATTCGTTTACAAGTGTCATCAATGCCAGGTCGGCTTCAAGAGACGCGGAATGCTCGTTAATCATCTGGCGAAACGCCATCCCGATGTACCCCCTGAATCGGTGCCCGAATTGAACTTGCCGATTCTGCGACAGACCCGGGATTATTACTGCCAATACTGCGACAAAGTTTACAAGAGCAGCAGCAAGAGGAAGGCTCACATCGTGAAGAATCATCCGGGGGCTGCGCTACCGCCGAGCAATCGTCAAAAAGAGGCGGACGTGCCGGGTCTGCCGAATTTGACGTTCAGCCAGACGGTGGGCAGCGTAACGACAACGCCGCAGGGCTGTCAATGGTGTCACAAGCAATACGCGAGCAAGGCGAAGCTCTTGCAGCACCAGCGAAAGAAACACTCGACCCTGATGGAGCCGGCCGACAAGGTGCCACGTGCACGCAATCGGCCGCCACGCGAACGTACGCAATCGTCGAATCTCGCGGACGGTAATTTTCTCATGAGCGATTATCTGCAGGCTTGCGACATCGACGAGCACTTTTTGAAGCCTAAGATCATCAAGATTACGGCGGACGTTGATCTCGTCGGCAACAGCGGCCTTGAGCTCGTCGGTCAGCAACAATTTGTACGTATGCGAGATATACGCTGA
Protein Sequence: MDSRGPPEGAPGDPLEMSIMDSKCSEISENWSATNLLASALGDHARKSNNRLLFLTVEYVEDQSRDYSRMFPAYEQVPFSPRAASPLSDFEHRVSPLDPNMSSTARYSPTPVPLPPLPFHNSVVVLQGPPSPLVVQAEAETNVSASIDFVGDRARNESARGGDRVADFVDAGNEEELVTGVGEELILMQGTTAGLEAPAPLMLAGIPGTEFALTRDFLVMQDDQINVMGTLRNQHASVDEQAAAAVATQSIVSQNGNDDVAMTVSMVQGIRNGTEKERLKERLKVEPPVRHVEQQDSSERMVRRSRRQINDKKTYWCDQCDSICHKSGECSLNNVRTIADQPVPSRAIATLPGSYLSINKLPCSAAATSSTRATDFGVFARRNIRARTQFGPIEGILCPYDGTPFEDSLPLLYETENEEFFKIDVSNENASNWMRFVRPAMTYEEQNLGICQQGDGIVFLTTRNILPKEELKAGPNPEYAARRSLEILEPGMKNDGDRSDSNAWPCFECNQRFSTSAKLQEHLTIHDSPKSETKSRMRRKNMNVPTNKLFKVVDGQTSLYTCPHCLKVFPRSYSLKRHLLIHPGAKSPPRYECSSCGEKFLHPRNRNRHVKMFHANDAKEKENSRQNSSEWRCATCNLTFGKSTLLSIHSLAHTSNVIVAENLDNFCPQCGEDFGTRADLINHVGKHGRVQLTKSTKLTSLASHKCNMCYKRFATKVRLQQHYLVHGAEDQKPLPCNICLKRFMNNSALSCHLKTHREDKQIFECLMCRELFNQVLMLKDHIETHRNEDETFSCPQCPRTFVKYSVIRKHIRAHHCERKHKCQFCAKRFPTVDKLRMHLLRHSDHRQFHCANCEKQFKRKDKLKEHMTRMHDSQRTKRDQTAQDNNQLKKFVPKVNPTDYNRFVYKCHQCQVGFKRRGMLVNHLAKRHPDVPPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRQKEADVPGLPNLTFSQTVGSVTTTPQGCQWCHKQYASKAKLLQHQRKKHSTLMEPADKVPRARNRPPRERTQSSNLADGNFLMSDYLQACDIDEHFLKPKIIKITADVDLVGNSGLELVGQQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01103752; iTF_01101560; iTF_01103034; iTF_01102269;
90% Identity: iTF_01101560;
80% Identity: -