Basic Information

Insect: Ophion obscuratus
Gene Symbol: -
Assembly: GCA_964007375.1
Location: OZ023312.1:28375606-28389187[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0027 36 5.7 0.4 19 49 247 277 236 280 0.91

2 10 0.24 3.2e+03 -0.6 0.0 26 49 320 343 308 346 0.82

3 10 5.6e-05 0.74 11.1 0.1 21 54 343 376 338 376 0.93

4 10 0.003 39 5.6 0.1 19 49 679 709 676 712 0.93

5 10 0.35 4.7e+03 -1.1 0.0 24 45 750 771 734 775 0.80

6 10 6.5e-05 0.86 10.9 0.1 21 54 775 808 767 808 0.92

7 10 0.003 39 5.6 0.1 19 49 1118 1148 1115 1151 0.93

8 10 0.86 1.1e+04 -2.3 0.0 27 50 1154 1177 1153 1181 0.84

9 10 0.1 1.3e+03 0.7 0.0 26 45 1191 1210 1177 1213 0.84

10 10 9e-05 1.2 10.4 0.2 21 54 1214 1247 1209 1247 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0027	36	5.7	0.4	19	49	247	277	236	280	0.91
2	10	0.24	3.2e+03	-0.6	0.0	26	49	320	343	308	346	0.82
3	10	5.6e-05	0.74	11.1	0.1	21	54	343	376	338	376	0.93
4	10	0.003	39	5.6	0.1	19	49	679	709	676	712	0.93
5	10	0.35	4.7e+03	-1.1	0.0	24	45	750	771	734	775	0.80
6	10	6.5e-05	0.86	10.9	0.1	21	54	775	808	767	808	0.92
7	10	0.003	39	5.6	0.1	19	49	1118	1148	1115	1151	0.93
8	10	0.86	1.1e+04	-2.3	0.0	27	50	1154	1177	1153	1181	0.84
9	10	0.1	1.3e+03	0.7	0.0	26	45	1191	1210	1177	1213	0.84
10	10	9e-05	1.2	10.4	0.2	21	54	1214	1247	1209	1247	0.93

Sequence Information

Coding Sequence: ATGACCGATCATATAATCGACGGCCAAGTGCGTACCAGAAAGCTCATAGGCAAATCGGTAACGTCGAATAAAAGCGAAGTGAGCAGCAACGGATACGTCGATTGTTCGACTACGACGACAATCACGCCTTCGTCGTCGATCACGGTCGAGCGCGAGGATGAGGATGTGAAAGACGGAGGAAAGGAAATTTGCGACGACGACAACTACACGATATTGCCATTTTGCGAGGTCAAGATATACGACGATGAGGAGGCTCCCTGTGCCGACGAGGACGACGGACTCGTTCAACCAAACGGCAAGAATGATGTTtctggtgattacttcaccgagACAATACCCGAGGCGATACAGTGCTTCAGGTGTAAGATATGCCTCGAGACGTACAACAATGCGTTGGCTTTCGAGTCACATGTGGTTGCGGAGCACGCTCCCGACATCGACAATAGCGACGAATTCCTGGAGAAGATTACCCTTTATCGAGTCTCTTGCGGTACCTCGTACCACACAAAAGTCAAGAGAAATCCCGATGCGCAACGCAACAACGAGGCCGGTCATGTGACCACGAGCTTCGAGAAGAAATCGAACGTGCTCTCGTGCAGTCAGTGCGACTACGAATCACCGAGCAAACGTTCCCTCGCGGTTCACGTCGCCAAACACGTCGAAAATGGTAAATTCGCGTGTAATACGTGCGGTCGTAGTTTCAAGAGCCGTCCCAAGCTCAAATGTCACATGAGGCTCAGTCATCGCGAGCAGAATCACATATGCGACGTTTGCGGGCGAATATATCGGGGCGCCAAGACTCTCCACAATCATCGTAAATTCGTACACTTCGGTGGTAAATACGATTGCAAGGCTTGCGGTCGTTTGCTCGCGAGCCAAAAGAATCTCGATTCTCACGTGGCGAAAGTTCACAACGAGAATCGACCGCCGAAAGAGGTGAAAACAACGAAAAACTTTGTATGCGACGCTTGCGGCAAAGTATTGTCACGTTCCGACAAATTAAAGATGCACATGAGAGTACACAACGGCGAGAAACCCTACGTATGCGCCATTTGCAAAGAATCGTTCGCCAAAAATAACTCCCTGAGGCAACACTTGATTTTGCACACCGGTGCTAAACCCTACGTGTGCGACATATGCGGCAAGGCCTTCGCTCAGAAACCCGGCCTCACCGGACATCGCAAATCACATCCGGGCCAACTTCCGCCCTTGCCACCGGTCTTCATCGATCCCATTATCGACGACCTCCTACGACAGCGATCTTTGAGGATTCGGCGTTCGCATCCGCATTTAGAGGTGACGCCGAATAAGAGCGAAGAGAGCAGCAACAGGTACGTCAGTTGTTCGACAACGACACCGACCACGTCACCGCTGTCGATCAAGGTCGAGCGTGAGGAGGTGGAAGATGATGATGAGGATATTTGCGACGACGAGAACGACACGATATTGCCATTTTGCGAGGTCAAGATAAGATACGACGATGAGGAGGCTCCCTGTGCCGGCGAGGGCGACGAGCTCGTTCATCtgaacgacgacaacgacgaggaCGATGTTTTCGGTGATTATTCCTGTCAAAAGTGCAACATCTACTTCACTACTTGGAACATGCTCAAGAGACACACGAAGGCGGTACACGAGGCGATACAGTGCTTCAAGTGTAAGATATGCCTCAAGGTGTACAACAAAGCGTTGGCTTTCGAGTCACACGTGGTCTCGGAGCACGGTACCGGTCTCGATTGTACCGACGATTTCTTGGAGAAGCTCACCCTTTATCGAGTCTCGCGCGGTACCTCGTTCTACACAAGGGTCAAGAGAAATCACGATGCGCGATGCAATAACAACGCCAGCCACGTGACCACGAGCTTCGAGACGAAATCGAACGTGCTATCGTGCAGTCAGTGCGACTACAAATCACCGAGCAAACGTTCTCTCGCGGTTCACGTGGCTAAACACGTCGAAAATGGTAAATTCGCGTGTAAAACGTGCGGTCGTAGTTTCAAGATACGTCGCGAGCTCACCTATCACATTAGGTTCAGTCATCGCGAGCAGAATCACATATGCGACGTTTGCGGGCGAATATATCGGGGCGCCAAGACTCTCCACAATCATCGTAAATTCGTACACTTCGGTGGTAAATACGATTGCAAGGCTTGCGGTCGTTTGCTCGCGAGCCAAAAGAATCTCGATTCTCACGTGGCGAAAGTTCACATCGAGAAACGACCGCCGAAAGAGGCGAAAACAACGGAAAACTTTGTATGCGACGCTTGCGGCAAAGTATTGTCACGTTCCGACAAATTAAAGATGCACATGAGAGTACACAACGGCGAGAAACCCTACGTATGCGCCATTTGCAAAGAATCGTTCGCCAAAAAGAACTCCCTGAGGCAACACTTGATTTTGCACACCGGTGCTAAACCCTACGTCTGCGACATATGCGGCAAGGCCTTCGCTCAGAAACCCGGCCTCACCGGACATCGCAAATCACATCCGGGCGAACATCCGCCCTTGCCACCGGTCTACATCGATTCCATTATCGACGACGTCCTACGTCAGCGATCTTTGAGGATTCAGCGTTCGCATCCGCATCTAGAGGTGACGTCGAATAAGAGCGAAGAGAGCAGCAACAGGCACGTCAGTTGTTCGATGACGACACCGACCACGTCACCGTTGTCGATCAAGATCGAGCGGGAGGAGGAGGATGAGGAGGAGGCGGAAGAAGAGGACGAAGACGAGGAGATTTGCGACGACGAGAACGACACGATATTGCCATTTTGCGAGGTGAAGATAAGATACGACGATGAGGAGGCTCCCTGTGCCGACGAGGGCGACGAGCTCGTTCATCTGAacgacgaaaacgacgaggacgATGTTTTCGGTGATTATTCCTGTCAAAAGTGCAACATCTATTTCACTACTTGGAACATGCTCAAGAGACACACGAAGGCGGTACACGAGGCGATACAGTGCTTCAAGTGTAAGATATGCCTCAAGGTGTACAACAAAGCGTTGGCTTTCGAGTCACACGTGGTCTCGGAGCACGGTACCGGCCTCGATTGTACCGATGATTTCTTGGAGAAGCTTACCCTTTATCGAGTCTCGCGCGGTACCTCGTTCTACACAAGAGTCAAGAGAAATCACGATGCGCAACGCAATAACAACACCAGCGATGTGATAATCAGCTTCGAGAAGAAATCGAACGTGCTCTCGTGCAGTCAGTGCGATTACAAATCACCGAGCAAACGTTCCCTCGCGGTTCACGTCGCTAAACACGTCGAAACTGGTAAATTCGCGTGTAAAACGTGCGGTCGTAGTTTCAAGATACGTCGCGAGCTCACCTATCACATTAGGTTCAGTCATCGCGAGCAGAATCACATATGCGACGTTTGCGGGCGAATATATCGGGGCGCCAAGACTCTCCACAATCATCGTAAATTCGTACACTTCGGTGGTAAATACGAGTGTAAGGTATGCGGTCGTTTGCTCGCGAGCCAGAAGAATCTCAATTCTCACGTGGCGAAACTTCACGTCGAGAAACGACCGCCGAAAGAGGTGAAAACAACGGAAAACTTTGTATGCGACGCTTGCGGCAAAGTATTGTCACGTTCCGACAAACTAAGAATGCACATGAGAGTACATAACGGCGAAAGACCCTACGTATGCGCCATTTGCAAAGAATCATTCGCCAAAAAGAACTCCCTGAGGCAACACTTGATATTGCACACAGGTGCTAAACCCTACGTGTGCGACATATGCGGCAAGGCCTTCGCTCAGAAACCCGGCCTCACCGGACATCGCAAATCACATCCGGGCGAACATCCGCCCTTGCCACCGGTCTACATCGATTCCATTCTCGACGACGTCCTACGACAGTGCGAACAATAA
Protein Sequence: MTDHIIDGQVRTRKLIGKSVTSNKSEVSSNGYVDCSTTTTITPSSSITVEREDEDVKDGGKEICDDDNYTILPFCEVKIYDDEEAPCADEDDGLVQPNGKNDVSGDYFTETIPEAIQCFRCKICLETYNNALAFESHVVAEHAPDIDNSDEFLEKITLYRVSCGTSYHTKVKRNPDAQRNNEAGHVTTSFEKKSNVLSCSQCDYESPSKRSLAVHVAKHVENGKFACNTCGRSFKSRPKLKCHMRLSHREQNHICDVCGRIYRGAKTLHNHRKFVHFGGKYDCKACGRLLASQKNLDSHVAKVHNENRPPKEVKTTKNFVCDACGKVLSRSDKLKMHMRVHNGEKPYVCAICKESFAKNNSLRQHLILHTGAKPYVCDICGKAFAQKPGLTGHRKSHPGQLPPLPPVFIDPIIDDLLRQRSLRIRRSHPHLEVTPNKSEESSNRYVSCSTTTPTTSPLSIKVEREEVEDDDEDICDDENDTILPFCEVKIRYDDEEAPCAGEGDELVHLNDDNDEDDVFGDYSCQKCNIYFTTWNMLKRHTKAVHEAIQCFKCKICLKVYNKALAFESHVVSEHGTGLDCTDDFLEKLTLYRVSRGTSFYTRVKRNHDARCNNNASHVTTSFETKSNVLSCSQCDYKSPSKRSLAVHVAKHVENGKFACKTCGRSFKIRRELTYHIRFSHREQNHICDVCGRIYRGAKTLHNHRKFVHFGGKYDCKACGRLLASQKNLDSHVAKVHIEKRPPKEAKTTENFVCDACGKVLSRSDKLKMHMRVHNGEKPYVCAICKESFAKKNSLRQHLILHTGAKPYVCDICGKAFAQKPGLTGHRKSHPGEHPPLPPVYIDSIIDDVLRQRSLRIQRSHPHLEVTSNKSEESSNRHVSCSMTTPTTSPLSIKIEREEEDEEEAEEEDEDEEICDDENDTILPFCEVKIRYDDEEAPCADEGDELVHLNDENDEDDVFGDYSCQKCNIYFTTWNMLKRHTKAVHEAIQCFKCKICLKVYNKALAFESHVVSEHGTGLDCTDDFLEKLTLYRVSRGTSFYTRVKRNHDAQRNNNTSDVIISFEKKSNVLSCSQCDYKSPSKRSLAVHVAKHVETGKFACKTCGRSFKIRRELTYHIRFSHREQNHICDVCGRIYRGAKTLHNHRKFVHFGGKYECKVCGRLLASQKNLNSHVAKLHVEKRPPKEVKTTENFVCDACGKVLSRSDKLRMHMRVHNGERPYVCAICKESFAKKNSLRQHLILHTGAKPYVCDICGKAFAQKPGLTGHRKSHPGEHPPLPPVYIDSILDDVLRQCEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01102981;
90% Identity: iTF_01102981;
80% Identity: iTF_01102981;