Oobs022497.1
Basic Information
- Insect
- Ophion obscuratus
- Gene Symbol
- Trl
- Assembly
- GCA_964007375.1
- Location
- OZ023318.1:35033494-35045191[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.8e-20 6.4e-16 59.3 0.0 14 49 28 63 26 66 0.95 2 3 0.75 9.9e+03 -2.1 0.1 16 33 109 126 93 132 0.66 3 3 3 4e+04 -4.1 0.4 38 45 220 227 219 228 0.62
Sequence Information
- Coding Sequence
- ATGGGGACGAAAAGAAGATTCGGACAAAAGTTTTGCAGGTCGTTGCAGGCGACGCAAATATGGGATATCATTTTACCGGACGATCCGAAGGGACGAAACGTTTCCGATCAGCCAACCACTTGTCCGCTCTGCGGAGCGGTTTTACGACAATCTCGAAACCTACGACGTCATCTGGAACTTCTTCATTTTGGACTTGGTAACGGTGGAAAAGCCGCCGCCATACGCGACAAATCTCGAAAATCTGAGAGATTGTCGGAACCTCATCGATCCCCGTTGCCGCCGACCACACGACCAGCTCACACCACGGCCCAACCGCACGACATGAGAACCTCGGACAATTCGGAATTTGCGGCACCCGTGCCTCTATCGCTCGCCTCCGTCATCAGCAGCGCTGCCGCTACTCTCAATCTTTCAGGAAATCTATTGACGCCAGTCTCGAGTATGCTCGGCCCGGATCCAAGTCCTCACCCGATACCGAGTATACCTTTGAGCTCGTGCAACACGATGTCCGGGCCATCGAACAATGGAATTTACTCGTCGGACAGCGGGGCCACCATGCTCAGCTCTCTGTTGCCGAATTTACCGCCGCTCTCGTCGCCCCACGACGTTTTTCGTCACACCGAAATGCTCCGAGGTATGGGTTATCACGACCCGTCGAGACCACACTTGCGACACCTAGAACGCACCGACGTCTCATAA
- Protein Sequence
- MGTKRRFGQKFCRSLQATQIWDIILPDDPKGRNVSDQPTTCPLCGAVLRQSRNLRRHLELLHFGLGNGGKAAAIRDKSRKSERLSEPHRSPLPPTTRPAHTTAQPHDMRTSDNSEFAAPVPLSLASVISSAAATLNLSGNLLTPVSSMLGPDPSPHPIPSIPLSSCNTMSGPSNNGIYSSDSGATMLSSLLPNLPPLSSPHDVFRHTEMLRGMGYHDPSRPHLRHLERTDVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01101001;
- 90% Identity
- iTF_01101001; iTF_01101742; iTF_01102449;
- 80% Identity
- -