Basic Information

Insect: Ophion luteus
Gene Symbol: Snai1
Assembly: GCA_944452655.1
Location: CALYBV010000834.1:184882-195618[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.9 8.4e+02 1.4 0.4 3 17 61 75 60 76 0.84

2 13 5.9e-05 0.0072 17.3 0.2 1 23 253 275 253 275 0.96

3 13 2.6e-05 0.0031 18.4 1.2 1 23 283 305 283 305 0.98

4 13 3.5e-06 0.00042 21.2 0.2 2 23 313 334 312 334 0.97

5 13 3e-06 0.00037 21.4 0.7 1 23 340 362 340 362 0.98

6 13 2.7e-05 0.0033 18.4 2.0 1 23 369 391 369 391 0.98

7 13 3.7e-05 0.0045 17.9 2.6 1 23 397 419 397 419 0.96

8 13 6e-06 0.00073 20.4 0.1 1 23 425 447 425 447 0.98

9 13 6e-07 7.3e-05 23.6 1.2 1 23 453 476 453 476 0.96

10 13 3.1e-06 0.00038 21.3 0.5 1 23 482 505 482 505 0.96

11 13 4.8e-06 0.00059 20.7 2.8 1 23 511 533 511 533 0.99

12 13 7.7e-05 0.0094 16.9 0.4 1 23 539 561 539 561 0.94

13 13 0.00024 0.03 15.4 0.1 1 23 567 591 567 591 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.9	8.4e+02	1.4	0.4	3	17	61	75	60	76	0.84
2	13	5.9e-05	0.0072	17.3	0.2	1	23	253	275	253	275	0.96
3	13	2.6e-05	0.0031	18.4	1.2	1	23	283	305	283	305	0.98
4	13	3.5e-06	0.00042	21.2	0.2	2	23	313	334	312	334	0.97
5	13	3e-06	0.00037	21.4	0.7	1	23	340	362	340	362	0.98
6	13	2.7e-05	0.0033	18.4	2.0	1	23	369	391	369	391	0.98
7	13	3.7e-05	0.0045	17.9	2.6	1	23	397	419	397	419	0.96
8	13	6e-06	0.00073	20.4	0.1	1	23	425	447	425	447	0.98
9	13	6e-07	7.3e-05	23.6	1.2	1	23	453	476	453	476	0.96
10	13	3.1e-06	0.00038	21.3	0.5	1	23	482	505	482	505	0.96
11	13	4.8e-06	0.00059	20.7	2.8	1	23	511	533	511	533	0.99
12	13	7.7e-05	0.0094	16.9	0.4	1	23	539	561	539	561	0.94
13	13	0.00024	0.03	15.4	0.1	1	23	567	591	567	591	0.94

Sequence Information

Coding Sequence: ATGACGGACGAGCCGCCCAACGAGCCCGGCCGATGCCTCGTATGCGACCTCAAGGTCGGAGCGACCGGTCGCAACGGCGTGCGCATTTTCGGCGAAAACGCGGACAAATCGCTCGCACGCGTCGTACGCTCCGTACTCGAGAAGGACATCACTGAGGAGACAGCCCACTCGGTGCTTTTGTGCAAAAAATGCTACAAATTATTTACCGAGTTCGACGAGCTGGAGACCAGACTGGCGGAGATCCGCTTGGAGGTCTACACGAACTACGAGAGGACATTGAAGAGAACGACGCCGGATGTCCAGGACGAGTACAACGATCACGACTACGTGGATCATTCGGACGCTCAGTTGGAATCTCCGGACGACAAGTACGGGGAAAAGGAGGCAGAGTGCGAGGCCGACAAGAACCCGGCGAGCCCTGAAATCGTAACGGAGCAGTATATGACGCACGACCTGGACAAAGTGCCCATCGAGACGATCGAGTACATCCACGAGGATGATATAGTAATCAAGCTGGAGACGTCGGCGCGATTGGAAGGCGCGGAGCAAGACGAGGAGCTCAACGATAGCGAGGATAGCGGTGGACAACCAGGCGCTGCCAAGACTTGCGTGAAACTGGAGGATTCCGAGTATCCGATCGTGACCCGCGACGGCACGGAATACACGTGTCTGTTGTGCTCGAGCGACGACGAGCGCGTCGTCGGTGACGCGAGGCTCATCGTTTCTCACGTCAAGGGCGTGCACGACTCGCGGCTCTACATATGCGACATATGCGGCACGGACTTCAAGAAGAGAAACGAATTGTCCGTTCACATGGACGATCACGTGGCCAAGGAGGAGGGCGACTTTCAGTGCGAGGTTTGCAACAGGATATTCAGCAATTTGCGTCTCTTCAGGATCCACAAACGCATACATTATCCCCAAGTGAAGTCGTGGCCCTGCGAGACCTGCGGCAAACGTTACAGCTCGAAGAATCTTCTCGAGGAGCACATAAACACGCACACGGGCATGAGGCCGTACGTGTGCGAGAACTGCGGCAAAGACTTCGCCTCCAAGTACACGTACAAGGCACACGCGAAGACTCACGAGGTCCGACCACGGCCGTTCGAGTGCAGCCAGTGCAACAAGTCCTTCCTCAGCCAACAAAATCTCAATCAGCACGAGAGAACGCACAACGGTGTTAAAGAATACGTCTGCCATCAATGCGGAAAAGCCTTCGGTTCCCATCacaatctcgaggtccacaatatcgtccataccggatacaagccttacatttgccggatatgcgggaaagcgttcgctcgcaaagccgagataagggatcacgagcgcacgcacacgggggagaagccgtatcagtgcgaattttgcggtgctacgttcagtcagcgatcgaatctgcagtcccacaaacgcgcgacccactacaacgacaagagatacaagtgcgacgattgcggcaagggattcaagagacggagactgctggactaccacataaaggccgcgcacacgggcgagaggccgtacaaatgcgagacgtgcaccgcgactttcgtctatccggagcacttcaagaaacacatgcgcattcacacaggcgaaaagccctacttgtgcgaggtatgcggcaaagctttcaacagtcgtgacaatcggaacgcgcatcgtttcattcacagcgataaaaagccgtacgagtgcctcgtttgcggcatgggattcatgaggaaaccgctgctttacgcccacatgcagacACAGGGTCATCTGAACGACACGATAGTGGTGAACCAGCCGAGGCTCACGAGCGAGGAGGATCAAGTGATAAGTTTGACGGACGGCCGTGTCGAGCTCCTGATGGAGGGACCGGAAACGGAACAACTCGAGGACGCCACCGAGCTGTACGTCGCCGAGCTCAAGGATCACGTTATAATACAGCGAGACGACGAGGACATCTATCAGGAGGAAAATGTTCTCAGTATACCGACCGAGGATGATGTCGAGCACGAGGAAATCGATCATCAGCAGGTGGTCGACGAGATGGCTTTCGTGGATACTGACGGAATGGAATGCAAGTCGGGCGATTCGGAGGAGCAACAGGTCGGCCAAGTGTACAGTTACAACGGTAGCGAGGAGGGCGAGACGATTGTAGTGCCTGCCAGCAGCACAGGCGATTACAAGGGCATCATCGGCGAGAACAAAAGTAATTCCGTCCATCTCGTACAAATAAGAATACCATCAGGGGCAACTGGCGAGGCGAGAAGTTGGTTAAGCCTCGTACAAAATACGTCGTAA
Protein Sequence: MTDEPPNEPGRCLVCDLKVGATGRNGVRIFGENADKSLARVVRSVLEKDITEETAHSVLLCKKCYKLFTEFDELETRLAEIRLEVYTNYERTLKRTTPDVQDEYNDHDYVDHSDAQLESPDDKYGEKEAECEADKNPASPEIVTEQYMTHDLDKVPIETIEYIHEDDIVIKLETSARLEGAEQDEELNDSEDSGGQPGAAKTCVKLEDSEYPIVTRDGTEYTCLLCSSDDERVVGDARLIVSHVKGVHDSRLYICDICGTDFKKRNELSVHMDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSKNLLEEHINTHTGMRPYVCENCGKDFASKYTYKAHAKTHEVRPRPFECSQCNKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSHHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTSEEDQVISLTDGRVELLMEGPETEQLEDATELYVAELKDHVIIQRDDEDIYQEENVLSIPTEDDVEHEEIDHQQVVDEMAFVDTDGMECKSGDSEEQQVGQVYSYNGSEEGETIVVPASSTGDYKGIIGENKSNSVHLVQIRIPSGATGEARSWLSLVQNTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01101512; iTF_01102988; iTF_01103725; iTF_01100780;
90% Identity: iTF_01100780;
80% Identity: -