Basic Information

Insect: Ophion obscuratus
Gene Symbol: Snai1
Assembly: GCA_964007375.1
Location: OZ023315.1:31887402-31899385[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00019 0.031 15.8 0.1 1 23 252 274 252 274 0.96

2 12 2.8e-05 0.0045 18.5 1.2 1 23 282 304 282 304 0.98

3 12 3.9e-06 0.00062 21.2 0.2 2 23 312 333 311 333 0.97

4 12 3.4e-06 0.00054 21.4 0.7 1 23 339 361 339 361 0.98

5 12 3e-05 0.0048 18.4 2.0 1 23 368 390 368 390 0.98

6 12 4.1e-05 0.0066 17.9 2.6 1 23 396 418 396 418 0.96

7 12 6.6e-06 0.0011 20.4 0.1 1 23 424 446 424 446 0.98

8 12 6.7e-07 0.00011 23.6 1.2 1 23 452 475 452 475 0.96

9 12 3.5e-06 0.00056 21.3 0.5 1 23 481 504 481 504 0.96

10 12 5.3e-06 0.00085 20.7 2.8 1 23 510 532 510 532 0.99

11 12 8.6e-05 0.014 16.9 0.4 1 23 538 560 538 560 0.94

12 12 0.00027 0.043 15.4 0.1 1 23 566 590 566 590 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00019	0.031	15.8	0.1	1	23	252	274	252	274	0.96
2	12	2.8e-05	0.0045	18.5	1.2	1	23	282	304	282	304	0.98
3	12	3.9e-06	0.00062	21.2	0.2	2	23	312	333	311	333	0.97
4	12	3.4e-06	0.00054	21.4	0.7	1	23	339	361	339	361	0.98
5	12	3e-05	0.0048	18.4	2.0	1	23	368	390	368	390	0.98
6	12	4.1e-05	0.0066	17.9	2.6	1	23	396	418	396	418	0.96
7	12	6.6e-06	0.0011	20.4	0.1	1	23	424	446	424	446	0.98
8	12	6.7e-07	0.00011	23.6	1.2	1	23	452	475	452	475	0.96
9	12	3.5e-06	0.00056	21.3	0.5	1	23	481	504	481	504	0.96
10	12	5.3e-06	0.00085	20.7	2.8	1	23	510	532	510	532	0.99
11	12	8.6e-05	0.014	16.9	0.4	1	23	538	560	538	560	0.94
12	12	0.00027	0.043	15.4	0.1	1	23	566	590	566	590	0.94

Sequence Information

Coding Sequence: ATGACGGACGAGCCGCCCAACGAGCCCGGCCGATGCCTCGTATGCGACCTCAAGGTCGGAGCGACCGGTCGCAACGGTGTGCGCATTTTCGGCGAAAACGCGGACAAATCGCTCGCACGCGTCGTACGCTCCGTACTCGAGAAGGACATCACGGAGGAGACAGCCCATTCGGTGCTTTTGTGCAAAAAATGCTGCAAATTATTTGCCGAGTTCGACGAGCTGGAGACCAGACTGGCGGAGATCCGCTTGGAGGTCTACACGAACTACGAGAGGACTTTGAAGAGAATGACTCCGGACGTCCAGGACGAGTACAACGATCACGACTACGTAGATCATTTGGACGCTCAGCTGGAATCTCCGGACGACAAGTACGGGGAAAAGGAGGCGGAGTGCGAGGTCGAGAAGAATGTGGCAAGCCCTGAAGTCGTAACGGAGTATATGACGCACGACCTGGACAAAGTGCCGATCGAGACGATCGAGTACATCCACGAGGACGATATAGTAATCAAGCTGGAGACGTCGACGCGATTGGAAGGCGCGGGGCAAGACGAGGAGCTCAACGATAGCGAGGATAGCGGCGGACAACCAGGCGCTACCAAGACTTGCGTGAAACTGGAGGAATCCGAGTATCCGATCGTGATGCGCGACGGCACGGAATACACGTGTCTGTTGTGCTCGAGCGACGACGAGCGCGTCGTCGGAGACGCGAGGCTCATCGTCTCGCACGTCAAGGGCGTGCACGACTCGCGGCTCTACATATGCGACATATGCGGCGCGGACTTCAAGAAGAGAAACGAATTGTCCGTTCACATGGACGATCACGTGGCCAAAGAGGAGGGCGACTTTCAGTGCGAGGTTTGCAACAGGATATTCAGCAATTTGCGTCTCTTCAGGATCCACAAACGCATACATTATCCCCAAGTGAAGTCGTGGCCCTGCGAGACCTGCGGCAAACGTTACAGCTCGAAGAATCTGCTCGAGGAGCACATAAACACGCACACGGGCATGAGGCCGTACGTATGCGAGAACTGCGGCAAAGACTTCGCCTCCAAGTACACGTACAAGGCACACGCGAAGACTCACGAGGTCCGACCACGGCCGTTCGAGTGCAGCCAGTGCAACAAGTCCTTCCTCAGCCAACAAAATCTCAATCAGCACGAGAGAACGCACAACGGTGTTAAAGAATACGTTTGCCATCAGTGCGGAAAAGCCTTCGGTTCCCATCACAATCTCGAGGTCCACAATATCGTCCATACCGGATACAAGCCTTACATATGCCGGATATGCGGGAAAGCGTTCGCTCGCAAAGCCGAGATAAGGGATCACGAGCGCACGCACACGGGGGAGAAGCCGTATCAGTGCGAATTTTGCGGTGCTACGTTCAGTCAGCGATCGAATCTGCAGTCCCACAAACGCGCGACCCACTACAACGACAAGAGATACAAGTGCGACGATTGCGGCAAGGGATTCAAGAGACGGAGACTCCTGGACTACCACATAAAGGCCGCGCACACGGGCGAGAGGCCGTACAAATGCGAGACGTGCACTGCGACTTTCGTCTATCCGGAGCACTTCAAGAAACACATGCGCATTCACACAGGCGAAAAGCCCTACTTGTGCGAGGTATGCGGCAAAGCTTTCAACAGTCGTGACAATCGAAACGCGCATCGTTTCATTCACAGCGATAAAAAGCCGTACGAGTGCCTCGTTTGCGGCATGGGATTCATGAGGAAACCGCTGCTTTACGCCCACATGCAGACACAGGGTCATCTGAACGACACGATAGTGGTGAACCAGCCGAGACTCACGAGCGAGGAGGATCAAGTGATAAGTTTGACCGACGGTCGTGTCGAGCTCCTGATGGAGGGACCGGAAACGGAAAACCTCGAGGACGCCACCGAGCTGTACGTCGCCGAGCTCAAGGATCACGTCATAATACAGCGAGACGACGAGGACATCTATCAGGAGGAAAATGTTCTCAGTATACCGACCGAGGAGGATGTCGAGCACGAGGAAATCGATCATCAGCAGGTGGTCGACGAGATGGCTTTCGTGGATACTGACGGAATGGAATGCAAGTCGGGCGATTCGGAGGAACAACAGGTCGGCCAAGTGTACAGTTACAACGGTAGCGAGGAGGGCGAGACGATTGTTGTGCCTGCGAGCAGCACAGGCGATTACAAGGGCATCATCGGCGAGAACAAAAGTAATTCCGTCCATCTCGTACAAATAAGAATACCATCGGGGACAGCTGGCGAGGCGAGAAGTTGGCTAAGCCTCGTACAAAatacgtcgtaa
Protein Sequence: MTDEPPNEPGRCLVCDLKVGATGRNGVRIFGENADKSLARVVRSVLEKDITEETAHSVLLCKKCCKLFAEFDELETRLAEIRLEVYTNYERTLKRMTPDVQDEYNDHDYVDHLDAQLESPDDKYGEKEAECEVEKNVASPEVVTEYMTHDLDKVPIETIEYIHEDDIVIKLETSTRLEGAGQDEELNDSEDSGGQPGATKTCVKLEESEYPIVMRDGTEYTCLLCSSDDERVVGDARLIVSHVKGVHDSRLYICDICGADFKKRNELSVHMDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSKNLLEEHINTHTGMRPYVCENCGKDFASKYTYKAHAKTHEVRPRPFECSQCNKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSHHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTSEEDQVISLTDGRVELLMEGPETENLEDATELYVAELKDHVIIQRDDEDIYQEENVLSIPTEEDVEHEEIDHQQVVDEMAFVDTDGMECKSGDSEEQQVGQVYSYNGSEEGETIVVPASSTGDYKGIIGENKSNSVHLVQIRIPSGTAGEARSWLSLVQNTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01102238;
90% Identity: iTF_01100780;
80% Identity: -