Basic Information

Insect: Ophion ellenae
Gene Symbol: Snai1
Assembly: GCA_963210295.1
Location: OY723388.1:29636729-29643964[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.7 7.4e+02 1.8 0.3 3 17 61 75 60 76 0.85

2 13 0.00017 0.022 16.0 0.1 1 23 253 275 253 275 0.96

3 13 2.5e-05 0.0033 18.6 1.2 1 23 283 305 283 305 0.98

4 13 3.5e-06 0.00045 21.4 0.2 2 23 313 334 312 334 0.97

5 13 3e-06 0.00039 21.5 0.7 1 23 340 362 340 362 0.98

6 13 2.7e-05 0.0035 18.6 2.0 1 23 369 391 369 391 0.98

7 13 3.7e-05 0.0048 18.1 2.6 1 23 397 419 397 419 0.96

8 13 5.9e-06 0.00077 20.6 0.1 1 23 425 447 425 447 0.98

9 13 6e-07 7.7e-05 23.8 1.2 1 23 453 476 453 476 0.96

10 13 3.1e-06 0.0004 21.5 0.5 1 23 482 505 482 505 0.96

11 13 4.8e-06 0.00062 20.9 2.8 1 23 511 533 511 533 0.99

12 13 7.7e-05 0.01 17.1 0.4 1 23 539 561 539 561 0.94

13 13 0.00024 0.031 15.5 0.1 1 23 567 591 567 591 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.7	7.4e+02	1.8	0.3	3	17	61	75	60	76	0.85
2	13	0.00017	0.022	16.0	0.1	1	23	253	275	253	275	0.96
3	13	2.5e-05	0.0033	18.6	1.2	1	23	283	305	283	305	0.98
4	13	3.5e-06	0.00045	21.4	0.2	2	23	313	334	312	334	0.97
5	13	3e-06	0.00039	21.5	0.7	1	23	340	362	340	362	0.98
6	13	2.7e-05	0.0035	18.6	2.0	1	23	369	391	369	391	0.98
7	13	3.7e-05	0.0048	18.1	2.6	1	23	397	419	397	419	0.96
8	13	5.9e-06	0.00077	20.6	0.1	1	23	425	447	425	447	0.98
9	13	6e-07	7.7e-05	23.8	1.2	1	23	453	476	453	476	0.96
10	13	3.1e-06	0.0004	21.5	0.5	1	23	482	505	482	505	0.96
11	13	4.8e-06	0.00062	20.9	2.8	1	23	511	533	511	533	0.99
12	13	7.7e-05	0.01	17.1	0.4	1	23	539	561	539	561	0.94
13	13	0.00024	0.031	15.5	0.1	1	23	567	591	567	591	0.94

Sequence Information

Coding Sequence: ATGACGGACGAGCCGCCCAGCGAGCCCGGCCGATGCCTCGTATGCGACCTCAAGGTCGGAGCGACCGGTCGCAACGGCGTGCGCATTTTCGGCGAAAACGCGGACAAATCGCTCGCACGCGTCGTACGCTCCGTACTCGAGAAGGACATCACTGAGGAGACAGCCCACTCGGTGCTTTTGTGCAAAAAATGCTACAAATTATTTACCGAGTTCGACGAGCTGGAGGCCAGACTGGCAGAGATCCGCTTGGAGGTCTACACGAACTACGAGAGGACGTTGAAGAGAACGATGCCGGACGTCCAGGACGAGTACAACGATCACGACTACGTGGATCATTCGGACGCTCAGTTGGAATCTCCGGACGACAAGTACGAGGAAAAGGAGGCGGGGTGCGAGGCCGAAAAGAACGCGGCCAGCCCTGAAATCGTAACGGAGCAGTATATGACGCACGACCTGGACAAAGTGCCGATGGAGACGATCGAGTACATCCACGAGGACGATATAGTCATCAAGCTGGAGACGTCGGCGCGATTGGAAGGCGCCGAGCAAGACGAGGAGCTCAACGATAGCGAGGATAGCGGTGGACAACCAGGCGCTACCAAGACTTGCGTGAAACTGGAGGAATCCGAGTATCCGATCGTGACCCGTGACGGCACGGAATACACGTGTCTGTTGTGCTCGAGCGACGACGAGCGCGTTGTCGGTGACGCGAGGCTCATCGTCTCTCACGTCAAGGGCGTGCACGACTCGCGGCTCTACATATGCGACATATGCGGCGCGGACTTCAAGAAGAGAAACGAATTGTCCGTTCACATGGACGATCACGTGGCCAAGGAGGAGGGCGACTTTCAGTGCGAGGTTTGCAACAGGATATTCAGCAATTTGCGTCTCTTCAGAATCCACAAACGCATACATTATCCCCAAGTGAAGTCGTGGCCCTGCGAGACCTGCGGCAAACGTTACAGCTCGAAGAATCTCCTCGAGGAGCACATAAACACGCACACGGGCATGAGGCCGTACGTATGCGAGAACTGCGGCAAAGACTTCGCCTCCAAGTACACGTACAAGGCACACGCGAAGACTCACGAGGTCAGACCACGGCCGTTCGAGTGCAGCCAGTGCAACAAGTCCTTCCTCAGCCAACAAAATCTCAATCAGCACGAGAGAACGCACAACGGTGTTAAAGAATACGTCTGCCATCAGTGCGGAAAAGCCTTCGGTTCCCATCACAATCTCGAGGTCCACAATATCGTCCATACCGGATACAAGCCTTACATTTGCCGGATATGCGGAAAGGCGTTCGCTCGCAAAGCCGAGATAAGGGATCACGAGCGCACGCACACGGGGGAGAAGCCGTATCAGTGCGAATTTTGCGGTGCTACGTTCAGTCAGCGATCGAATCTGCAGTCCCACAAACGCGCGACCCACTACAACGACAAGAGATACAAGTGCGACGATTGCGGCAAGGGATTCAAGAGACGGAGACTCCTGGACTACCACATAAAGGCCGCGCACACGGGCGAGAGGCCGTACAAATGCGAGACGTGCACCGCGACTTTCGTCTATCCGGAGCACTTCAAGAAACACATGCGCATTCACACAGGCGAAAAGCCCTACTTGTGCGAGGTATGCGGCAAAGCTTTCAACAGTCGTGACAATCGGAACGCGCATCGTTTCATTCACAGCGATAAAAAGCCGTACGAGTGCCTCGTTTGCGGCATGGGATTCATGAGGAAACCGCTGCTTTACGCCCACATGCAGACACAGGGACATCTGAACGACACGATAGTGGTGAACCAGCCGAGGCTCACCAGCGAGGAGGATCAAGTGATAAGTTTGACGGACGGTCGTGTTGAGCTCCTGATGGAGGGACCGGAAACGGAACAACTCGAGGACGCCACCGAGCTGTACGTCGCCGAGCTCAAGGATCACGTTATAATACAGCGAGACGACGAGGACATCTATCAGGAGGAAAATGTTCTCAGTATACCGACCGAGGAGGATGTCGAGCACGAGGAAATCGATCATCAGCAGGTGGTCGACGAGGTTCGTCTCCAATAG
Protein Sequence: MTDEPPSEPGRCLVCDLKVGATGRNGVRIFGENADKSLARVVRSVLEKDITEETAHSVLLCKKCYKLFTEFDELEARLAEIRLEVYTNYERTLKRTMPDVQDEYNDHDYVDHSDAQLESPDDKYEEKEAGCEAEKNAASPEIVTEQYMTHDLDKVPMETIEYIHEDDIVIKLETSARLEGAEQDEELNDSEDSGGQPGATKTCVKLEESEYPIVTRDGTEYTCLLCSSDDERVVGDARLIVSHVKGVHDSRLYICDICGADFKKRNELSVHMDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSKNLLEEHINTHTGMRPYVCENCGKDFASKYTYKAHAKTHEVRPRPFECSQCNKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSHHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTSEEDQVISLTDGRVELLMEGPETEQLEDATELYVAELKDHVIIQRDDEDIYQEENVLSIPTEEDVEHEEIDHQQVVDEVRLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01102238;
90% Identity: iTF_01100780;
80% Identity: -