Basic Information

Insect: Ophion ellenae
Gene Symbol: PRDM5
Assembly: GCA_963210295.1
Location: OY723385.1:54277483-54280189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00021 0.027 15.7 1.5 1 23 107 130 107 130 0.95

2 15 0.0001 0.014 16.7 2.7 1 23 137 160 137 160 0.98

3 15 0.00031 0.04 15.2 0.3 1 23 195 217 195 217 0.95

4 15 0.00012 0.016 16.5 0.2 2 23 224 246 223 246 0.97

5 15 5.1e-05 0.0066 17.7 0.6 1 23 253 274 253 274 0.97

6 15 5.4e-05 0.007 17.6 3.1 1 23 280 303 280 303 0.97

7 15 0.00015 0.019 16.2 1.2 2 23 500 521 499 521 0.96

8 15 1.2e-05 0.0015 19.7 0.8 1 23 527 549 527 549 0.97

9 15 0.32 41 5.7 2.8 1 23 556 579 556 579 0.92

10 15 4.7e-06 0.00061 20.9 2.0 1 23 585 607 585 607 0.97

11 15 0.65 85 4.7 4.4 2 20 613 631 612 635 0.82

12 15 4.9e-05 0.0064 17.7 2.1 1 23 642 664 642 664 0.95

13 15 2.3e-07 3e-05 25.1 0.9 1 23 668 690 668 690 0.99

14 15 0.03 3.9 8.9 1.1 1 23 696 718 696 718 0.94

15 15 4.7e-06 0.00061 20.9 0.6 1 23 724 746 724 746 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00021	0.027	15.7	1.5	1	23	107	130	107	130	0.95
2	15	0.0001	0.014	16.7	2.7	1	23	137	160	137	160	0.98
3	15	0.00031	0.04	15.2	0.3	1	23	195	217	195	217	0.95
4	15	0.00012	0.016	16.5	0.2	2	23	224	246	223	246	0.97
5	15	5.1e-05	0.0066	17.7	0.6	1	23	253	274	253	274	0.97
6	15	5.4e-05	0.007	17.6	3.1	1	23	280	303	280	303	0.97
7	15	0.00015	0.019	16.2	1.2	2	23	500	521	499	521	0.96
8	15	1.2e-05	0.0015	19.7	0.8	1	23	527	549	527	549	0.97
9	15	0.32	41	5.7	2.8	1	23	556	579	556	579	0.92
10	15	4.7e-06	0.00061	20.9	2.0	1	23	585	607	585	607	0.97
11	15	0.65	85	4.7	4.4	2	20	613	631	612	635	0.82
12	15	4.9e-05	0.0064	17.7	2.1	1	23	642	664	642	664	0.95
13	15	2.3e-07	3e-05	25.1	0.9	1	23	668	690	668	690	0.99
14	15	0.03	3.9	8.9	1.1	1	23	696	718	696	718	0.94
15	15	4.7e-06	0.00061	20.9	0.6	1	23	724	746	724	746	0.99

Sequence Information

Coding Sequence: ATGACGATCGTGAAGACCGAGTGTCCCACGGACAACGTCATCCCGCGCTCGAGCGTAGCGACGACCGGAGTGGCCTTGGTGAAGGTGGAACCGTGTTCGGAGGACTATTACGGCATTGATATTCACGAGGAGTCATCGGCAGTCTTTAAAACCGAATGGCAGTTGAAAGTCGAGCCGAGTAGTCCTCCGGGATGTTTCTCCAATACGCTCGACCGGAGAAACGAGACAGGCGAATCGAACCAAGTTTCGTCTCTCGTGCAGGGCGAATCCGACGTTCAGGATAAGACGGGAAAGACGAGCGTCTCGCAGCCCGAGTACCACGAGTGTTCCATCTGCAAGGCGAAGTTTACACGCGCGAGGAGTTTGAGGGATCATCGGGCACGCGTGCATCCGTCCAACCAGCCCGAGTTCGAGTGCGATCATTGCGGCTATCGTTACAGGCTCAAGAGGGATATTGCACGTCACATGCGGCGCAATCATCTAGCTCAGCGTCTCAGCTGTATTTACTGCGGCAAACGCGTCATTTATCTGGACACACACGAGCAGCGATGTCGCGCTGGCTCGGACAACGCCACTTTCATTCACCGCTGTAGGACATGCGGAAGGATATTCGACGACGAGAGCCTCCTCGCCAATCACGTGCTCGCGCATGTGCGTCAAAAGTGCAGCACATGCGACATTTGCGGCCGCGTTGCCAAGGATCCCGAAAAACTCTTGCGTCACAAGCGCCGGGTCCATCCACCCGTGAAACTGATGTTTCCCTGTCCCGTCTGCAAGAAGTCGTTCACGAAGAACAACTTGTATCAGCACGTGCTCGTGCACTCGGGCCTGAGGCCCTTCAAGTGTGATGTTTGCGGCTGCGCGTTCGTTCAACGCTCGACGTTCATCAATCATCGCAGGCAGAAGCACAAGGGACCCCTGCCACCCGTCAAACCCGTATCCGTCGCCGATCTGGCTAACGAGTTCATGCGACAATTCTCCAAAGACCAGTACAATCCGCTAGATCCGCTAGGCTCGACGTTTCTGACGGTTAAGTTAGGCGAAGATTACTTCCGTATGCCAAAGTCACTGACGTTGTTCATGAAGAAGCAAACGCCACCGAGCCCCATGCAGCAACGACAGCAGGCGACGTCGACCAGCGTCGAGACGACGAACGCCAAATTGGAGATAGACGACGAAGAATTGAAAGTCCCGAAGCACGAGGCGAAGGAAACGAGCGAGGCGAAGGAAACGAGCGAGGCAACGAGCGATGCAGGTACGCTCGAAGTTGCGAGGAGCAAGCCGGACAAGTCGACCAAGGCGCAGGCGCGAAGTAGAAGCGCCAGAGCGAAGAAGAGAAACGAACGTGAGAGTGTTGAGAGGAAGAACGAGACGAACGATGGGACGAGCGAGCACGACGACGAGGTCGATTATTACGACGAGTTCGACGATTTGGACGACATACCGCTCGATTACAGGCAGAAAAAAGCGAGATTCGGCAATTCGAAGAAATTGCTCACGTGCGAAATATGCTATTTGATATTCGATCGCAAGAGCAAACTCACCAGTCACATGTTCAAGCACAGTAACTCGAGGCCCCACGTGTGCACCGTTTGCTCGAAAGCCTTCAAGACCGGCGCCTATCTCACTCGACACATGGAGATACACGCGGACATCGTGCAGGAGCACGCCTGCGGCCTGTGCGACTTCAAGGCACGCACCAAACCCTATCTCAAGATTCATCACATCAGAAAGCACACGGACGACTACAATTTCAATTGTCGCGAGTGCGGCAAACGCTTCAAGGTACAATCGGACTACACCACCCACATGAAGGACCACGACATGGAGTCTTGCGTTTGCGACATTTGCGGCTCTTCGTACACCAGCCGTAGCTCGCTCTACTTTCACAAGCATTACAAGCACAAGCCCAAAATCAAGGAGTTCGAGTGCCTCACGTGCAAGAAACGCTTCAAGAGCCAAAAGAATCTCAACACCCACGCGGAACTCCACAAAATGAAATACGTTTGCGAACAGTGCGGCATGGAGTTCAAGTCGAAATACGGCTTGACGAAACACTTGCGCACTCATTCCGGCGAGAAGTCTTATTTGTGCGCTATCTGCGGCAAAACGTTCGGTTGCCTGAGCTCGCAAAAGATTCATCTGCTTACGCACGTGGGCGAGCGACCGTACGTATGCGACATTTGCGGCCAGAGCTTCACTCAGAGATCACCAATGATGCTACATCGGAGGAAACATCCGGGCGTCAATCCACCACCGCCACCCATCAAAATAACCAATCTCCTGCACGGCGTTCAAGACAAGATAATCGTTAACAAACACCCGCGAAAGGACGAGGCGAAGCAGGACGTGTGA
Protein Sequence: MTIVKTECPTDNVIPRSSVATTGVALVKVEPCSEDYYGIDIHEESSAVFKTEWQLKVEPSSPPGCFSNTLDRRNETGESNQVSSLVQGESDVQDKTGKTSVSQPEYHECSICKAKFTRARSLRDHRARVHPSNQPEFECDHCGYRYRLKRDIARHMRRNHLAQRLSCIYCGKRVIYLDTHEQRCRAGSDNATFIHRCRTCGRIFDDESLLANHVLAHVRQKCSTCDICGRVAKDPEKLLRHKRRVHPPVKLMFPCPVCKKSFTKNNLYQHVLVHSGLRPFKCDVCGCAFVQRSTFINHRRQKHKGPLPPVKPVSVADLANEFMRQFSKDQYNPLDPLGSTFLTVKLGEDYFRMPKSLTLFMKKQTPPSPMQQRQQATSTSVETTNAKLEIDDEELKVPKHEAKETSEAKETSEATSDAGTLEVARSKPDKSTKAQARSRSARAKKRNERESVERKNETNDGTSEHDDEVDYYDEFDDLDDIPLDYRQKKARFGNSKKLLTCEICYLIFDRKSKLTSHMFKHSNSRPHVCTVCSKAFKTGAYLTRHMEIHADIVQEHACGLCDFKARTKPYLKIHHIRKHTDDYNFNCRECGKRFKVQSDYTTHMKDHDMESCVCDICGSSYTSRSSLYFHKHYKHKPKIKEFECLTCKKRFKSQKNLNTHAELHKMKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVNPPPPPIKITNLLHGVQDKIIVNKHPRKDEAKQDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01102992; iTF_01102244;
90% Identity: iTF_01102992; iTF_01102244;
80% Identity: -